fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G18560 PUCHI Integrase-type DNA-binding superfamily protein (.1)

>AT5G18560.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 184
NdeI CA|TATG 815
StyI C|C[AT][AT]GG 165, 184


Click here to view TAIR data

>AT5G18560.1 length:1047
ATGTCAACCT CCAAAACCCT AGACCATAAT AAACCATTTG AAACATCCCA 
50
AACGCAAATG GGTTTTGCTC TGATCCACCA AAACACATCC GCCAACACAA 
100
CCACCACCAC CACAACCGGC GAGAGACGAG GCCGGAGATC AAAGCAAGCG 
150
GAGCCAGGGA GGTTCCTAGG AGTCCGGAGA CGTCCATGGG GTCGTTACGC 
200
AGCCGAGATA AGAGATCCAA CCACCAAAGA ACGTCACTGG CTAGGCACTT 
250
TCGACACAGC TCACGAAGCT GCTCTTGCCT ACGATAGAGC TGCTCTTTCA 
300
ATGAGAGGTA CTCAAGCTCG AACCAACTTC GTCTACACTC CAACTGATGT 
350
CCACACCATC CTCACAAACC CTAATCTCCA CTCTCTCATT GTCTCTCCTT 
400
ACAATAACAA CCAATCTTTC TTACCAAACT CTTCTCCACA GTTTGTCATC 
450
GATCATCATC CTCATTATCA AAACTATCAT CAACCACAAC AACCTAAACA 
500
CACTCTCCCC CAAACTGTCT TACCCGCGGC TTCTTTCAAA ACGCCAGTTC 
550
GTCATCAAAG CGTGGATATT CAAGCGTTTG GTAATAGTCC TCAAAACTCA 
600
TCTTCTAACG GCTCGTTATC TTCTTCACTA GACGAAGAAA ACAACTTCTT 
650
CTTCTCTTTA ACAAGCGAAG AACATAATAA GTCCAATAAC AACTCGGGTT 
700
ACTTGGATTG CATTGTCCCA AACCACTGCC TTAAACCACC TCCGGAGGCC 
750
ACCACCACCC AAAATCAAGC CGGAGCTAGT TTCACAACTC CGGTAGCAAG 
800
CAAAGCCTCT GAACCATATG GAGGGTTTAG TAATAGCTAC TTCGAAGATG 
850
GTGAGATGAT GATGATGAAT CATCATGAGT TTGGTTCGTG TGATCTCTCT 
900
GCCATGATCA CGAACTATGG TGCTGCTGCC GCTTCAATGT CAATGGAAGA 
950
TTACGGGATG ATGGAGCCGC AAGATTTATC TTCTTCTTCT ATCGCTGCTT 
1000
TTGGAGATGT CGTTGCAGAC ACTACAGGCT TCTACTCAGT CTTTTAG
1050

>AT5G18560.1 longest ORF length:348
MSTSKTLDHN KPFETSQTQM GFALIHQNTS ANTTTTTTTG ERRGRRSKQA 
50
EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAHEA ALAYDRAALS 
100
MRGTQARTNF VYTPTDVHTI LTNPNLHSLI VSPYNNNQSF LPNSSPQFVI 
150
DHHPHYQNYH QPQQPKHTLP QTVLPAASFK TPVRHQSVDI QAFGNSPQNS 
200
SSNGSLSSSL DEENNFFFSL TSEEHNKSNN NSGYLDCIVP NHCLKPPPEA 
250
TTTQNQAGAS FTTPVASKAS EPYGGFSNSY FEDGEMMMMN HHEFGSCDLS 
300
AMITNYGAAA ASMSMEDYGM MEPQDLSSSS IAAFGDVVAD TTGFYSVF
350