fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G18680 AtTLP11 tubby like protein 11 (.1)

>AT5G18680.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NotI, PacI, PstI, SacI, SalI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 697
BglII A|GATCT 269
HindIII A|AGCTT 506
NcoI C|CATGG 939
NdeI CA|TATG 677
NheI G|CTAGC 994
PvuII CAG|CTG 74
SmaI CCC|GGG 701
StyI C|C[AT][AT]GG 316, 537, 939


Click here to view TAIR data

>AT5G18680.1 length:1170
ATGACCTTAC GTAGCTTAAT CCTTGAGATG CGTTCGAGAC CGCATCGTGT 
50
GGTCCACGAC CTTGCCGCCG CCGCAGCTGC CGATTCCACT TCTGTGTCAT 
100
CGCAAGATTA TCGCTGGTCA GAGATTCCTG AAGAGCTTCT TAGGGAGATT 
150
CTGATTCGTG TTGAAGCGGC GGACGGTGGC GGATGGCCGT CACGACGCAG 
200
CGTGGTGGCT TGTGCCGGCG TTTGTCGTGG CTGGCGGCTA CTTATGAACG 
250
AAACCGTCGT TGTCCCTGAG ATCTCTTCTA AGTTGACTTT CCCCATCTCT 
300
CTCAAGCAGC CTGGTCCAAG GGATTCACTG GTTCAATGCT TTATCAAACG 
350
TAATCGAATT ACGCAATCAT ATCATCTCTA TCTCGGATTA ACCAACTCTT 
400
TAACGGATGA TGGGAAGTTT TTGCTTGCTG CGTGTAAGTT GAAGCACACA 
450
ACTTGTACGG ATTACATTAT CTCTTTACGT TCTGATGATA TGTCGAGAAG 
500
AAGCCAAGCT TATGTTGGCA AAGTGAGATC GAACTTCCTA GGAACGAAAT 
550
TCACTGTCTT TGATGGAAAT CTGCTGCCTT CAACGGGAGC CGCAAAGTTG 
600
AGAAAGAGCC GATCTTATAA TCCCGCAAAA GTTTCAGCAA AAGTTCCTCT 
650
TGGAAGTTAT CCTGTCGCTC ATATCACATA TGAGCTGAAT GTCTTAGGAT 
700
CCCGGGGACC AAGAAAGATG CAATGTCTTA TGGACACAAT ACCTACAAGC 
750
ACAATGGAGC CTCAAGGAGT AGCTTCAGAA CCATCAGAGT TTCCCTTACT 
800
CGGTACTCGG TCAACCTTAT CCAGGTCTCA GTCAAAACCA TTACGCAGTA 
850
GCTCAAGCCA CCTGAAAGAA ACACCATTAG TGCTGAGCAA CAAGACACCA 
900
CGGTGGCACG AGCAGCTACG CTGCTGGTGC TTGAATTTCC ATGGCCGTGT 
950
CACAGTAGCG TCAGTGAAGA ACTTTCAGCT CGTGGCAGCA GGAGCTAGCT 
1000
GTGGCAGTGG CACGGGAATG TCACCGGAGA GGCAGAGCGA GCGGATTATA 
1050
TTGCAGTTTG GGAAAGTCGG GAAAGATATG TTCACGATGG ATTATGGATA 
1100
CCCGATCTCA GCTTTCCAGG CTTTTGCCAT TTGCTTGAGC AGCTTTGAGA 
1150
CTAGAATCGC TTGTGAATGA 
1200

>AT5G18680.1 longest ORF length:389
MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI 
50
LIRVEAADGG GWPSRRSVVA CAGVCRGWRL LMNETVVVPE ISSKLTFPIS 
100
LKQPGPRDSL VQCFIKRNRI TQSYHLYLGL TNSLTDDGKF LLAACKLKHT 
150
TCTDYIISLR SDDMSRRSQA YVGKVRSNFL GTKFTVFDGN LLPSTGAAKL 
200
RKSRSYNPAK VSAKVPLGSY PVAHITYELN VLGSRGPRKM QCLMDTIPTS 
250
TMEPQGVASE PSEFPLLGTR STLSRSQSKP LRSSSSHLKE TPLVLSNKTP 
300
RWHEQLRCWC LNFHGRVTVA SVKNFQLVAA GASCGSGTGM SPERQSERII 
350
LQFGKVGKDM FTMDYGYPIS AFQAFAICLS SFETRIACE
400