Locus |
Common name |
Short description |
AT5G19490 |
|
Histone superfamily protein (.1) |
>AT5G19490.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HinfI, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
416 |
AciI
| C|CGC |
415 |
AflIII
| A|CPuPyGT |
19, 146 |
AluI
| AG|CT |
9, 109, 117, 295, 386, 669 |
AlwNI
| CAGNNN|CTG |
281 |
ApoI
| Pu|AATTPy |
460 |
AvaII
| G|G[AT]CC |
502 |
BclI
| T|GATCA |
729 |
BfaI
| C|TAG |
384, 671, 741, 747 |
BsaAI
| PyAC|GTPu |
147 |
BsaJI
| C|CNNGG |
168, 417 |
BslI
| CCNNNNN|NNGG |
267, 307, 519 |
BsrDI
| GCAATGNN| |
84 |
BstAPI
| GCANNNN|NTGC |
209 |
BstUI
| CG|CG |
416 |
BstYI
| Pu|GATCPy |
720 |
BtgI
| C|CPuPyGG |
417 |
BtsI
| GCAGTGNN| |
206 |
Cac8I
| GCN|NGC |
213 |
DdeI
| C|TNAG |
162, 237, 275, 590 |
DpnI
| GA-CH3|TC |
614, 719, 728 |
DpnII
| |GATC |
614, 719, 728 |
EcoO109I
| PuG|GNCCPy |
503 |
Fnu4HI
| GC|NGC |
415, 496 |
HaeIII
| GG|CC |
413 |
HincII
| GTPy|PuAC |
184 |
HindIII
| A|AGCTT |
110 |
Hpy188I
| TCN|GA |
276, 591 |
Hpy99I
| CG[AT]CG| |
536 |
HpyCH4III
| ACN|GT |
180, 246, 481 |
HpyCH4IV
| A|CGT |
19, 146 |
HpyCH4V
| TG|CA |
51, 210, 332, 366, 559 |
MboI
| |GATC |
614, 719, 728 |
MseI
| T|TAA |
39, 618, 702 |
MslI
| CAPyNN|NNPuTG |
149, 364 |
MspA1I
| C[AC]G|C[GT]G |
417 |
MwoI
| GCNNNNN|NNGC |
209 |
NlaIII
| CATG| |
368, 654 |
NlaIV
| GGN|NCC |
503, 524 |
NsiI
| ATGCA|T |
367 |
PflFI
| GACN|NNGTC |
247, 507 |
PpuMI
| PuG|G[AT]CCPy |
503 |
PshAI
| GACNN|NNGTC |
223 |
SacII
| CCGC|GG |
417 |
Sau3AI
| |GATC |
614, 719, 728 |
Sau96I
| G|GNCC |
502 |
Taqƒ¿I
| T|CGA |
612 |
TseI
| G|C[AT]GC |
496 |
Tsp45I
| |GT[CG]AC |
751 |
Tsp509I
| |AATT |
459, 627 |
TspRI
| NNCA[CG]TGNN| |
206, 247, 283 |
Tth111I
| GACN|NNGTC |
247, 507 |
Click here to view TAIR data
>AT5G19490.1 length:795
ATGAAGAAGA AGCTCCAGAC ACGTTTTCCA GCGACAAGGA TTAAGAAGAT | 50 |
TATGCAAACT GATGAGGAAG TTGGCAAAAT AGCAATGGCA GTCCCTCTTC | 100 |
TTGTTTCTAA AGCTTTGGAG CTGTTTTTAC AAGACTTGTG TAATCACACG | 150 |
TATGATGTAA CTCTAAGCCG AGGTGCTAAA ACTGTCAACG CCTTTCATTT | 200 |
GAAGCAGTGT GTGCAAGCGA CTAATGTCTT TGATTTTCTA AGAGACACTG | 250 |
TCGCTAAAGT TCCTGATTTG GGTGGCTCAG ACACTGAAGA CCAATCAGCT | 300 |
ACCAAAAGAA GGAAAGTTGT TGATGGAAGT AGTTGCAACG ATGAAGATAT | 350 |
GATAAAGACC ACTCAAATGC ATGAGGTCAA ACATACTAGC TGTGGCAGAG | 400 |
GAAGGCGAGG TAGAGGCCGC GGACGAAGTA GTGGAAGAAC AGGAAGTGGG | 450 |
CTGTCTCTAA AATTTGAAGA AGATTTAGAA GACGGTTCTC CCGAAAGCAG | 500 |
CAGGACCCCG TCTCCCGAAA ACGGGAGCCT TTCTCACGAC GATACATCTT | 550 |
GGAAGAAAGT TGCATCACAC AACAATCATC ATAGTAGTAA CTCAGAGGTA | 600 |
AAAGTAAGGA ACTTCGATCT TAATGTTGAA TTAGATGAGA ATGGAGACAA | 650 |
TGCTACATGG CTGGAAACAC AGCTAGAGAG AAGTCCAGAT TACCCGTTGG | 700 |
AGATTAACGA AATGAAAATA GATCCTGATG ATCAACAACA GGCTAGTGCT | 750 |
AGTGACGAGG AAGATTATGA TGAAGAAAGC ATAGACCAAG AGTGA | 800 |
>AT5G19490.1 longest ORF length:264
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT | 50 |
YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA | 100 |
TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG | 150 |
LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV | 200 |
KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA | 250 |
SDEEDYDEES IDQE | 300 |
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