fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G19490 Histone superfamily protein (.1)

>AT5G19490.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HinfI, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 416
AciI C|CGC 415
AflIII A|CPuPyGT 19, 146
AluI AG|CT 9, 109, 117, 295, 386, 669
AlwNI CAGNNN|CTG 281
ApoI Pu|AATTPy 460
AvaII G|G[AT]CC 502
BclI T|GATCA 729
BfaI C|TAG 384, 671, 741, 747
BsaAI PyAC|GTPu 147
BsaJI C|CNNGG 168, 417
BslI CCNNNNN|NNGG 267, 307, 519
BsrDI GCAATGNN| 84
BstAPI GCANNNN|NTGC 209
BstUI CG|CG 416
BstYI Pu|GATCPy 720
BtgI C|CPuPyGG 417
BtsI GCAGTGNN| 206
Cac8I GCN|NGC 213
DdeI C|TNAG 162, 237, 275, 590
DpnI GA-CH3|TC 614, 719, 728
DpnII |GATC 614, 719, 728
EcoO109I PuG|GNCCPy 503
Fnu4HI GC|NGC 415, 496
HaeIII GG|CC 413
HincII GTPy|PuAC 184
HindIII A|AGCTT 110
Hpy188I TCN|GA 276, 591
Hpy99I CG[AT]CG| 536
HpyCH4III ACN|GT 180, 246, 481
HpyCH4IV A|CGT 19, 146
HpyCH4V TG|CA 51, 210, 332, 366, 559
MboI |GATC 614, 719, 728
MseI T|TAA 39, 618, 702
MslI CAPyNN|NNPuTG 149, 364
MspA1I C[AC]G|C[GT]G 417
MwoI GCNNNNN|NNGC 209
NlaIII CATG| 368, 654
NlaIV GGN|NCC 503, 524
NsiI ATGCA|T 367
PflFI GACN|NNGTC 247, 507
PpuMI PuG|G[AT]CCPy 503
PshAI GACNN|NNGTC 223
SacII CCGC|GG 417
Sau3AI |GATC 614, 719, 728
Sau96I G|GNCC 502
Taqƒ¿I T|CGA 612
TseI G|C[AT]GC 496
Tsp45I |GT[CG]AC 751
Tsp509I |AATT 459, 627
TspRI NNCA[CG]TGNN| 206, 247, 283
Tth111I GACN|NNGTC 247, 507


Click here to view TAIR data

>AT5G19490.1 length:795
ATGAAGAAGA AGCTCCAGAC ACGTTTTCCA GCGACAAGGA TTAAGAAGAT 
50
TATGCAAACT GATGAGGAAG TTGGCAAAAT AGCAATGGCA GTCCCTCTTC 
100
TTGTTTCTAA AGCTTTGGAG CTGTTTTTAC AAGACTTGTG TAATCACACG 
150
TATGATGTAA CTCTAAGCCG AGGTGCTAAA ACTGTCAACG CCTTTCATTT 
200
GAAGCAGTGT GTGCAAGCGA CTAATGTCTT TGATTTTCTA AGAGACACTG 
250
TCGCTAAAGT TCCTGATTTG GGTGGCTCAG ACACTGAAGA CCAATCAGCT 
300
ACCAAAAGAA GGAAAGTTGT TGATGGAAGT AGTTGCAACG ATGAAGATAT 
350
GATAAAGACC ACTCAAATGC ATGAGGTCAA ACATACTAGC TGTGGCAGAG 
400
GAAGGCGAGG TAGAGGCCGC GGACGAAGTA GTGGAAGAAC AGGAAGTGGG 
450
CTGTCTCTAA AATTTGAAGA AGATTTAGAA GACGGTTCTC CCGAAAGCAG 
500
CAGGACCCCG TCTCCCGAAA ACGGGAGCCT TTCTCACGAC GATACATCTT 
550
GGAAGAAAGT TGCATCACAC AACAATCATC ATAGTAGTAA CTCAGAGGTA 
600
AAAGTAAGGA ACTTCGATCT TAATGTTGAA TTAGATGAGA ATGGAGACAA 
650
TGCTACATGG CTGGAAACAC AGCTAGAGAG AAGTCCAGAT TACCCGTTGG 
700
AGATTAACGA AATGAAAATA GATCCTGATG ATCAACAACA GGCTAGTGCT 
750
AGTGACGAGG AAGATTATGA TGAAGAAAGC ATAGACCAAG AGTGA
800

>AT5G19490.1 longest ORF length:264
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT 
50
YDVTLSRGAK TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA 
100
TKRRKVVDGS SCNDEDMIKT TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG 
150
LSLKFEEDLE DGSPESSRTP SPENGSLSHD DTSWKKVASH NNHHSSNSEV 
200
KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI DPDDQQQASA 
250
SDEEDYDEES IDQE
300