fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G19790 RAP2.11 related to AP2 11 (.1)

>AT5G19790.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, StyI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 627
SpeI A|CTAGT 379
XhoI C|TCGAG 173


Click here to view TAIR data

>AT5G19790.1 length:762
ATGGAACATC AAACAACTCC AAAGCAGAAA ACTAAGGAGA AGAGCAAAGG 
50
CAACAAGACT AAGTTTGTGG GAGTTAGGCA AAGGCCTTCA GGAAAATGGG 
100
TGGCAGAGAT CAAAGACACT ACACAAAAGA TACGGATGTG GCTCGGAACC 
150
TTTGAAACCG CAGAAGAAGC CGCTCGAGCC TACGATGAAG CTGCATGTCT 
200
CTTACGTGGC TCCAATACTC GCACCAATTT CGCAAACCAT TTTCCTAACA 
250
ACTCACAACT ATCTTTGAAG ATCAGAAATC TTCTTCACCA GAAGCAGAGC 
300
ATGAAGCAGC AGCAACAACA ACAACACAAA CCAGTTTCTT CTTTAACGGA 
350
TTGCAACATC AACTACATCT CGACTGCTAC TAGTCTCACC ACAACCACCA 
400
CCACCACCAC TACCACGGCC ATACCGCTCA ATAATGTGTA CCGACCAGAT 
450
TCATCGGTCA TTGGGCAACC AGAAACCGAG GGTCTCCAGC TTCCTTATTC 
500
GTGGCCCCTT GTCTCTGGAT TCAACCATCA GATTCCATTG GCTCAGGCAG 
550
GGGGAGAAAC ACATGGACAT CTCAACGATC ACTACTCAAC CGATCAACAT 
600
TTGGGTCTTG CAGAAATTGA AAGACAGATA TCTGCGTCCC TATATGCAAT 
650
GAATGGAGCT AACAGTTACT ATGACAACAT GAATGCAGAA TATGCAATTT 
700
TCGATCCTAC CGATCCCATT TGGGATCTCC CTTCACTCTC CCAACTCTTC 
750
TGCCCTACGT GA
800

>AT5G19790.1 longest ORF length:253
MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT 
50
FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS 
100
MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD 
150
SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH 
200
LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF 
250
CPT
300