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| Locus | Common name | Short description |
| AT5G20730 | MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 | MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) |
>AT5G20730.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI
| Name | Recognition sequence | Cut positions |
| BglII | A|GATCT | 2561, 2925 |
| EcoRI | G|AATTC | 3319 |
| HindIII | A|AGCTT | 1974, 2489, 3419 |
| NcoI | C|CATGG | 1189, 3310 |
| NdeI | CA|TATG | 225, 1092 |
| NheI | G|CTAGC | 2035 |
| PstI | CTGCA|G | 755, 1516, 1597, 1699 |
| PvuII | CAG|CTG | 752, 1025, 1513, 2257, 2353, 2993, 3359 |
| StyI | C|C[AT][AT]GG | 1189, 3310 |
| XhoI | C|TCGAG | 2901 |
Click here to view TAIR data
>AT5G20730.1 length:3498
ATGAAAGCTC CTTCATCAAA TGGAGTTTCT CCTAATCCTG TTGAAGGAGA | 50 |
AAGGAGAAAT ATAAACTCAG AGCTATGGCA CGCTTGTGCT GGGCCATTGA | 100 |
TTTCGTTGCC TCCAGCAGGA AGTCTTGTTG TTTACTTCCC TCAAGGTCAC | 150 |
AGTGAGCAAG TCGCGGCTTC AATGCAGAAG CAGACTGATT TCATACCAAG | 200 |
TTACCCGAAT CTTCCTTCCA AGCTCATATG CATGCTCCAC AATGTTACAC | 250 |
TGAATGCTGA TCCTGAGACG GATGAGGTCT ATGCGCAGAT GACTCTTCAG | 300 |
CCAGTAAACA AATATGACAG AGATGCATTG CTTGCTTCTG ACATGGGTCT | 350 |
TAAGCTAAAC AGACAACCTA ATGAATTTTT CTGCAAAACC CTCACGGCGA | 400 |
GTGACACAAG TACTCACGGT GGATTTTCTG TACCCCGACG AGCTGCTGAG | 450 |
AAAATCTTTC CTGCTCTGGA TTTCTCGATG CAACCACCTT GTCAGGAGCT | 500 |
TGTTGCTAAG GATATTCATG ACAACACATG GACTTTCAGA CATATTTATC | 550 |
GAGGTCAACC AAAAAGGCAC TTGCTAACTA CAGGCTGGAG TGTGTTTGTC | 600 |
AGCACGAAAA GGCTCTTTGC TGGAGACTCT GTTCTTTTTA TAAGAGATGG | 650 |
AAAGGCGCAA CTTCTGTTGG GGATAAGACG TGCAAATAGA CAACAGCCTG | 700 |
CACTTTCTTC ATCTGTAATA TCAAGTGATA GCATGCACAT CGGAGTTCTT | 750 |
GCAGCTGCAG CTCATGCTAA TGCTAATAAC AGTCCTTTCA CCATTTTCTA | 800 |
CAACCCGAGG TGGGCTGCTC CTGCTGAGTT TGTGGTTCCT TTAGCCAAGT | 850 |
ATACCAAAGC GATGTACGCT CAAGTTTCCC TCGGTATGCG GTTTAGAATG | 900 |
ATATTTGAGA CTGAAGAATG TGGAGTTCGT CGGTATATGG GTACAGTTAC | 950 |
CGGTATCAGT GATCTTGATC CAGTGAGATG GAAAAACTCT CAGTGGCGGA | 1000 |
ATCTTCAGAT TGGATGGGAT GAGTCAGCTG CTGGTGATAG GCCCAGTCGA | 1050 |
GTTTCAGTTT GGGACATTGA ACCGGTTTTA ACTCCTTTCT ACATATGTCC | 1100 |
TCCTCCATTT TTCCGACCTC GCTTTTCTGG ACAACCTGGA ATGCCAGATG | 1150 |
ATGAGACTGA CATGGAGTCT GCACTGAAGA GAGCAATGCC ATGGCTTGAT | 1200 |
AATAGCTTAG AGATGAAAGA CCCTTCGAGT ACTATCTTTC CTGGTCTGAG | 1250 |
TTTAGTTCAG TGGATGAATA TGCAGCAGCA GAACGGCCAG CTACCCTCTG | 1300 |
CTGCTGCACA GCCAGGTTTC TTCCCATCAA TGCTTTCGCC AACCGCGGCG | 1350 |
CTGCACAACA ATCTTGGCGG CACTGATGAT CCCTCCAAGT TACTGAGCTT | 1400 |
TCAGACGCCG CACGGGGGGA TTTCCTCCTC AAATCTCCAA TTTAACAAAC | 1450 |
AGAATCAGCA AGCCCCAATG TCTCAGTTGC CTCAGCCACC AACTACGTTG | 1500 |
TCCCAACAAC AGCAGCTGCA GCAATTGTTG CACTCCTCTT TGAACCATCA | 1550 |
ACAACAGCAA TCGCAGTCTC AACAACAGCA ACAACAACAA CAGTTGCTGC | 1600 |
AGCAGCAACA ACAATTGCAG TCTCAACAAC ACAGCAACAA CAATCAATCG | 1650 |
CAGTCTCAGC AACAACAACA ATTGCTCCAG CAGCAACAAC AACAACAACT | 1700 |
GCAGCAACAA CATCAACAAC CGTTACAGCA ACAGACTCAG CAGCAGCAGC | 1750 |
TAAGAACACA GCCATTGCAA TCTCACTCGC ATCCACAGCC ACAACAGTTA | 1800 |
CAACAACATA AGTTGCAGCA ACTTCAGGTT CCACAGAATC AGCTTTACAA | 1850 |
TGGTCAACAA GCAGCGCAGC AGCATCAGTC GCAACAAGCA TCTACACATC | 1900 |
ATTTGCAACC ACAATTAGTT TCGGGATCAA TGGCAAGCAG TGTCATCACG | 1950 |
CCTCCGTCCA GCTCCCTTAA TCAAAGCTTT CAACAGCAAC AACAACAGTC | 2000 |
TAAGCAACTT CAACAAGCAC ATCACCATTT AGGTGCTAGC ACTAGCCAGA | 2050 |
GTAGTGTAAT TGAAACCAGC AAGTCTTCAT CCAATCTGAT GTCCGCACCG | 2100 |
CCGCAAGAGA CACAGTTTTC ACGACAAGTA GAACAGCAGC AGCCTCCTGG | 2150 |
TCTCAACGGG CAGAATCAGC AAACACTTTT GCAGCAGAAA GCTCACCAGG | 2200 |
CACAGGCCCA ACAGATATTC CAGCAGAGTC TCTTGGAACA GCCGCATATA | 2250 |
CAGTTTCAGC TGTTACAGAG ATTACAACAG CAACAGCAGC AGCAATTTCT | 2300 |
TTCGCCGCAG TCTCAGTTAC CACACCATCA ATTGCAAAGC CAGCAGTTGC | 2350 |
AACAGCTGCC TACTCTCTCT CAAGGTCATC AGTTTCCGTC ATCTTGCACT | 2400 |
AACAATGGCT TATCGACGTT GCAACCACCT CAAATGCTGG TGAGCCGACC | 2450 |
TCAGGAAAAA CAAAACCCAC CGGTTGGGGG AGGGGTCAAA GCTTATTCAG | 2500 |
GCATCACAGA TGGAGGAGAT GCACCTTCCT CTTCAACGTC GCCTTCCACC | 2550 |
AACAACTGTC AGATCTCTTC TTCAGGCTTT CTCAACAGAA GCCAAAGCGG | 2600 |
GCCAGCGATC TTGATACCTG ATGCAGCGAT TGATATGTCT GGTAATCTTG | 2650 |
TTCAGGATCT TTACAGCAAA TCCGATATGC GGCTAAAACA AGAACTCGTG | 2700 |
GGTCAGCAAA AGTCCAAAGC TAGTTTAACA GATCATCAAC TAGAAGCATC | 2750 |
TGCCTCTGGA ACTTCTTACG GTTTAGATGG AGGCGAAAAC AACAGACAAC | 2800 |
AAAATTTCTT GGCTCCAACT TTTGGCCTTG ACGGTGATTC CAGGAACAGC | 2850 |
TTGCTCGGTG GAGCTAATGT TGATAATGGC TTTGTGCCTG ACACGCTACT | 2900 |
CTCGAGGGGA TATGACTCCC AGAAAGATCT TCAGAACATG CTTTCAAACT | 2950 |
ATGGAGGAGT GACAAATGAC ATTGGTACAG AGATGTCTAC TTCAGCTGTA | 3000 |
AGAACTCAAT CTTTTGGTGT CCCCAATGTG CCCGCCATTT CGAACGATCT | 3050 |
AGCTGTCAAC GATGCTGGAG TTCTTGGTGG TGGATTGTGG CCAGCTCAGA | 3100 |
CTCAGCGAAT GCGAACTTAT ACAAAGGTGC AAAAACGAGG CTCAGTGGGG | 3150 |
AGATCAATAG ACGTCAACCG TTACAGAGGT TACGATGAGC TGAGGCATGA | 3200 |
TCTAGCGCGC ATGTTTGGGA TCGAAGGACA GCTCGAAGAT CCTCAAACAT | 3250 |
CTGACTGGAA ACTTGTTTAT GTCGATCATG AAAATGACAT CCTCCTCGTC | 3300 |
GGCGATGATC CATGGGAAGA ATTCGTAAAC TGTGTTCAGA GCATTAAGAT | 3350 |
CCTTTCATCA GCTGAGGTTC AGCAGATGAG CTTAGACGGG AACTTTGCCG | 3400 |
GTGTACCAGT TACTAATCAA GCTTGTAGTG GCGGTGACAG TGGCAATGCT | 3450 |
TGGAGAGGTC ATTATGATGA TAACTCAGCC ACTTCGTTTA ACCGGTGA | 3500 |
>AT5G20730.1 longest ORF length:1165
MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH | 50 |
SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ | 100 |
PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE | 150 |
KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV | 200 |
STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL | 250 |
AAAAHANANN SPFTIFYNPR WAAPAEFVVP LAKYTKAMYA QVSLGMRFRM | 300 |
IFETEECGVR RYMGTVTGIS DLDPVRWKNS QWRNLQIGWD ESAAGDRPSR | 350 |
VSVWDIEPVL TPFYICPPPF FRPRFSGQPG MPDDETDMES ALKRAMPWLD | 400 |
NSLEMKDPSS TIFPGLSLVQ WMNMQQQNGQ LPSAAAQPGF FPSMLSPTAA | 450 |
LHNNLGGTDD PSKLLSFQTP HGGISSSNLQ FNKQNQQAPM SQLPQPPTTL | 500 |
SQQQQLQQLL HSSLNHQQQQ SQSQQQQQQQ QLLQQQQQLQ SQQHSNNNQS | 550 |
QSQQQQQLLQ QQQQQQLQQQ HQQPLQQQTQ QQQLRTQPLQ SHSHPQPQQL | 600 |
QQHKLQQLQV PQNQLYNGQQ AAQQHQSQQA STHHLQPQLV SGSMASSVIT | 650 |
PPSSSLNQSF QQQQQQSKQL QQAHHHLGAS TSQSSVIETS KSSSNLMSAP | 700 |
PQETQFSRQV EQQQPPGLNG QNQQTLLQQK AHQAQAQQIF QQSLLEQPHI | 750 |
QFQLLQRLQQ QQQQQFLSPQ SQLPHHQLQS QQLQQLPTLS QGHQFPSSCT | 800 |
NNGLSTLQPP QMLVSRPQEK QNPPVGGGVK AYSGITDGGD APSSSTSPST | 850 |
NNCQISSSGF LNRSQSGPAI LIPDAAIDMS GNLVQDLYSK SDMRLKQELV | 900 |
GQQKSKASLT DHQLEASASG TSYGLDGGEN NRQQNFLAPT FGLDGDSRNS | 950 |
LLGGANVDNG FVPDTLLSRG YDSQKDLQNM LSNYGGVTND IGTEMSTSAV | 1000 |
RTQSFGVPNV PAISNDLAVN DAGVLGGGLW PAQTQRMRTY TKVQKRGSVG | 1050 |
RSIDVNRYRG YDELRHDLAR MFGIEGQLED PQTSDWKLVY VDHENDILLV | 1100 |
GDDPWEEFVN CVQSIKILSS AEVQQMSLDG NFAGVPVTNQ ACSGGDSGNA | 1150 |
WRGHYDDNSA TSFNR | 1200 |