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| Locus | Common name | Short description |
| AT5G20730 | MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 | MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) |
>AT5G20730.2 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI
| Name | Recognition sequence | Cut positions |
| BglII | A|GATCT | 2558, 2922 |
| EcoRI | G|AATTC | 3316 |
| HindIII | A|AGCTT | 1971, 2486, 3416 |
| NcoI | C|CATGG | 1186, 3307 |
| NdeI | CA|TATG | 225, 1089 |
| NheI | G|CTAGC | 2032 |
| PstI | CTGCA|G | 755, 1513, 1594, 1696 |
| PvuII | CAG|CTG | 752, 1022, 1510, 2254, 2350, 2990, 3356 |
| StyI | C|C[AT][AT]GG | 1186, 3307 |
| XhoI | C|TCGAG | 2898 |
Click here to view TAIR data
>AT5G20730.2 length:3495
ATGAAAGCTC CTTCATCAAA TGGAGTTTCT CCTAATCCTG TTGAAGGAGA | 50 |
AAGGAGAAAT ATAAACTCAG AGCTATGGCA CGCTTGTGCT GGGCCATTGA | 100 |
TTTCGTTGCC TCCAGCAGGA AGTCTTGTTG TTTACTTCCC TCAAGGTCAC | 150 |
AGTGAGCAAG TCGCGGCTTC AATGCAGAAG CAGACTGATT TCATACCAAG | 200 |
TTACCCGAAT CTTCCTTCCA AGCTCATATG CATGCTCCAC AATGTTACAC | 250 |
TGAATGCTGA TCCTGAGACG GATGAGGTCT ATGCGCAGAT GACTCTTCAG | 300 |
CCAGTAAACA AATATGACAG AGATGCATTG CTTGCTTCTG ACATGGGTCT | 350 |
TAAGCTAAAC AGACAACCTA ATGAATTTTT CTGCAAAACC CTCACGGCGA | 400 |
GTGACACAAG TACTCACGGT GGATTTTCTG TACCCCGACG AGCTGCTGAG | 450 |
AAAATCTTTC CTGCTCTGGA TTTCTCGATG CAACCACCTT GTCAGGAGCT | 500 |
TGTTGCTAAG GATATTCATG ACAACACATG GACTTTCAGA CATATTTATC | 550 |
GAGGTCAACC AAAAAGGCAC TTGCTAACTA CAGGCTGGAG TGTGTTTGTC | 600 |
AGCACGAAAA GGCTCTTTGC TGGAGACTCT GTTCTTTTTA TAAGAGATGG | 650 |
AAAGGCGCAA CTTCTGTTGG GGATAAGACG TGCAAATAGA CAACAGCCTG | 700 |
CACTTTCTTC ATCTGTAATA TCAAGTGATA GCATGCACAT CGGAGTTCTT | 750 |
GCAGCTGCAG CTCATGCTAA TGCTAATAAC AGTCCTTTCA CCATTTTCTA | 800 |
CAACCCGAGG GCTGCTCCTG CTGAGTTTGT GGTTCCTTTA GCCAAGTATA | 850 |
CCAAAGCGAT GTACGCTCAA GTTTCCCTCG GTATGCGGTT TAGAATGATA | 900 |
TTTGAGACTG AAGAATGTGG AGTTCGTCGG TATATGGGTA CAGTTACCGG | 950 |
TATCAGTGAT CTTGATCCAG TGAGATGGAA AAACTCTCAG TGGCGGAATC | 1000 |
TTCAGATTGG ATGGGATGAG TCAGCTGCTG GTGATAGGCC CAGTCGAGTT | 1050 |
TCAGTTTGGG ACATTGAACC GGTTTTAACT CCTTTCTACA TATGTCCTCC | 1100 |
TCCATTTTTC CGACCTCGCT TTTCTGGACA ACCTGGAATG CCAGATGATG | 1150 |
AGACTGACAT GGAGTCTGCA CTGAAGAGAG CAATGCCATG GCTTGATAAT | 1200 |
AGCTTAGAGA TGAAAGACCC TTCGAGTACT ATCTTTCCTG GTCTGAGTTT | 1250 |
AGTTCAGTGG ATGAATATGC AGCAGCAGAA CGGCCAGCTA CCCTCTGCTG | 1300 |
CTGCACAGCC AGGTTTCTTC CCATCAATGC TTTCGCCAAC CGCGGCGCTG | 1350 |
CACAACAATC TTGGCGGCAC TGATGATCCC TCCAAGTTAC TGAGCTTTCA | 1400 |
GACGCCGCAC GGGGGGATTT CCTCCTCAAA TCTCCAATTT AACAAACAGA | 1450 |
ATCAGCAAGC CCCAATGTCT CAGTTGCCTC AGCCACCAAC TACGTTGTCC | 1500 |
CAACAACAGC AGCTGCAGCA ATTGTTGCAC TCCTCTTTGA ACCATCAACA | 1550 |
ACAGCAATCG CAGTCTCAAC AACAGCAACA ACAACAACAG TTGCTGCAGC | 1600 |
AGCAACAACA ATTGCAGTCT CAACAACACA GCAACAACAA TCAATCGCAG | 1650 |
TCTCAGCAAC AACAACAATT GCTCCAGCAG CAACAACAAC AACAACTGCA | 1700 |
GCAACAACAT CAACAACCGT TACAGCAACA GACTCAGCAG CAGCAGCTAA | 1750 |
GAACACAGCC ATTGCAATCT CACTCGCATC CACAGCCACA ACAGTTACAA | 1800 |
CAACATAAGT TGCAGCAACT TCAGGTTCCA CAGAATCAGC TTTACAATGG | 1850 |
TCAACAAGCA GCGCAGCAGC ATCAGTCGCA ACAAGCATCT ACACATCATT | 1900 |
TGCAACCACA ATTAGTTTCG GGATCAATGG CAAGCAGTGT CATCACGCCT | 1950 |
CCGTCCAGCT CCCTTAATCA AAGCTTTCAA CAGCAACAAC AACAGTCTAA | 2000 |
GCAACTTCAA CAAGCACATC ACCATTTAGG TGCTAGCACT AGCCAGAGTA | 2050 |
GTGTAATTGA AACCAGCAAG TCTTCATCCA ATCTGATGTC CGCACCGCCG | 2100 |
CAAGAGACAC AGTTTTCACG ACAAGTAGAA CAGCAGCAGC CTCCTGGTCT | 2150 |
CAACGGGCAG AATCAGCAAA CACTTTTGCA GCAGAAAGCT CACCAGGCAC | 2200 |
AGGCCCAACA GATATTCCAG CAGAGTCTCT TGGAACAGCC GCATATACAG | 2250 |
TTTCAGCTGT TACAGAGATT ACAACAGCAA CAGCAGCAGC AATTTCTTTC | 2300 |
GCCGCAGTCT CAGTTACCAC ACCATCAATT GCAAAGCCAG CAGTTGCAAC | 2350 |
AGCTGCCTAC TCTCTCTCAA GGTCATCAGT TTCCGTCATC TTGCACTAAC | 2400 |
AATGGCTTAT CGACGTTGCA ACCACCTCAA ATGCTGGTGA GCCGACCTCA | 2450 |
GGAAAAACAA AACCCACCGG TTGGGGGAGG GGTCAAAGCT TATTCAGGCA | 2500 |
TCACAGATGG AGGAGATGCA CCTTCCTCTT CAACGTCGCC TTCCACCAAC | 2550 |
AACTGTCAGA TCTCTTCTTC AGGCTTTCTC AACAGAAGCC AAAGCGGGCC | 2600 |
AGCGATCTTG ATACCTGATG CAGCGATTGA TATGTCTGGT AATCTTGTTC | 2650 |
AGGATCTTTA CAGCAAATCC GATATGCGGC TAAAACAAGA ACTCGTGGGT | 2700 |
CAGCAAAAGT CCAAAGCTAG TTTAACAGAT CATCAACTAG AAGCATCTGC | 2750 |
CTCTGGAACT TCTTACGGTT TAGATGGAGG CGAAAACAAC AGACAACAAA | 2800 |
ATTTCTTGGC TCCAACTTTT GGCCTTGACG GTGATTCCAG GAACAGCTTG | 2850 |
CTCGGTGGAG CTAATGTTGA TAATGGCTTT GTGCCTGACA CGCTACTCTC | 2900 |
GAGGGGATAT GACTCCCAGA AAGATCTTCA GAACATGCTT TCAAACTATG | 2950 |
GAGGAGTGAC AAATGACATT GGTACAGAGA TGTCTACTTC AGCTGTAAGA | 3000 |
ACTCAATCTT TTGGTGTCCC CAATGTGCCC GCCATTTCGA ACGATCTAGC | 3050 |
TGTCAACGAT GCTGGAGTTC TTGGTGGTGG ATTGTGGCCA GCTCAGACTC | 3100 |
AGCGAATGCG AACTTATACA AAGGTGCAAA AACGAGGCTC AGTGGGGAGA | 3150 |
TCAATAGACG TCAACCGTTA CAGAGGTTAC GATGAGCTGA GGCATGATCT | 3200 |
AGCGCGCATG TTTGGGATCG AAGGACAGCT CGAAGATCCT CAAACATCTG | 3250 |
ACTGGAAACT TGTTTATGTC GATCATGAAA ATGACATCCT CCTCGTCGGC | 3300 |
GATGATCCAT GGGAAGAATT CGTAAACTGT GTTCAGAGCA TTAAGATCCT | 3350 |
TTCATCAGCT GAGGTTCAGC AGATGAGCTT AGACGGGAAC TTTGCCGGTG | 3400 |
TACCAGTTAC TAATCAAGCT TGTAGTGGCG GTGACAGTGG CAATGCTTGG | 3450 |
AGAGGTCATT ATGATGATAA CTCAGCCACT TCGTTTAACC GGTGA | 3500 |
>AT5G20730.2 longest ORF length:1164
MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH | 50 |
SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ | 100 |
PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE | 150 |
KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV | 200 |
STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL | 250 |
AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI | 300 |
FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV | 350 |
SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN | 400 |
SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL | 450 |
HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS | 500 |
QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ | 550 |
SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ | 600 |
QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP | 650 |
PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP | 700 |
QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ | 750 |
FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN | 800 |
NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN | 850 |
NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG | 900 |
QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL | 950 |
LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR | 1000 |
TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR | 1050 |
SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG | 1100 |
DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW | 1150 |
RGHYDDNSAT SFNR | 1200 |