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| Locus | Common name | Short description |
| AT5G21960 | Integrase-type DNA-binding superfamily protein (.1) |
>AT5G21960.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AflII, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 126, 139 |
| AccIII(BspMII) | T|CCGGA | 198 |
| AciI | C|CGC | 227, 305 |
| AflIII | A|CPuPyGT | 437 |
| AhdI | GACNNN|NNGTC | 441 |
| AluI | AG|CT | 247, 273, 570, 598 |
| AlwNI | CAGNNN|CTG | 90 |
| ApoI | Pu|AATTPy | 474, 642 |
| AseI | AT|TAAT | 364 |
| AvaII | G|G[AT]CC | 483 |
| BfaI | C|TAG | 249 |
| BsaAI | PyAC|GTPu | 311, 353 |
| BsaHI | GPu|CGPyC | 225 |
| BsaJI | C|CNNGG | 165, 329 |
| BsaWI | [AT]|CCGG[AT] | 198, 285 |
| BsiHKAI | G[AT]GC[AT]|C | 170 |
| BslI | CCNNNNN|NNGG | 312, 390 |
| Bsp1286I | G[GAT]GC[CAT]|C | 170 |
| BspEI | T|CCGGA | 198 |
| BspHI | T|CATGA | 501 |
| BssKI | |CCNGG | 165, 207 |
| BstF5I | GGATGNN| | 4 |
| BstUI | CG|CG | 126, 139 |
| BstYI | Pu|GATCPy | 89 |
| BtrI | CAC|GTC | 438 |
| Cac8I | GCN|NGC | 129, 172, 250, 262 |
| DdeI | C|TNAG | 58, 115, 494 |
| DpnI | GA-CH3|TC | 88, 497 |
| DpnII | |GATC | 88, 497 |
| EcoNI | CCTNN|NNNAGG | 390 |
| EcoO109I | PuG|GNCCPy | 484 |
| Fnu4HI | GC|NGC | 123, 141, 227 |
| HaeIII | GG|CC | 161, 381, 450 |
| HhaI | GCG|C | 125 |
| HinP1I | G|CGC | 125 |
| HinfI | G|ANTC | 62, 108, 203, 236, 525 |
| HpaII | C|CGG | 165, 197, 207, 284 |
| Hpy188I | TCN|GA | 221, 495, 579, 646 |
| Hpy99I | CG[AT]CG| | 137, 439 |
| HpyCH4III | ACN|GT | 151 |
| HpyCH4IV | A|CGT | 310, 352, 386, 437 |
| HpyCH4V | TG|CA | 4 |
| MboI | |GATC | 88, 497 |
| MseI | T|TAA | 363, 455, 630 |
| MspI | C|CGG | 165, 197, 207, 284 |
| MwoI | GCNNNNN|NNGC | 120, 138 |
| NciI | CC|[CG]GG | 165, 207 |
| NheI | G|CTAGC | 250 |
| NlaIII | CATG| | 500 |
| NlaIV | GGN|NCC | 163 |
| NsiI | ATGCA|T | 5 |
| PmlI | CAC|GTG | 311, 353 |
| PpuMI | PuG|G[AT]CCPy | 484 |
| RsaI | GT|AC | 16, 26, 538 |
| Sau3AI | |GATC | 88, 497 |
| Sau96I | G|GNCC | 162, 381, 483 |
| ScrFI | CC|NGG | 165, 207 |
| SspI | AAT|ATT | 628 |
| Taqƒ¿I | T|CGA | 105, 135 |
| TfiI | G|A[AT]TC | 62, 203, 236, 525 |
| TseI | G|C[AT]GC | 230 |
| Tsp45I | |GT[CG]AC | 82, 302 |
| Tsp509I | |AATT | 343, 361, 473, 533, 641 |
Click here to view TAIR data
>AT5G21960.1 length:651
ATGGATGCAT CCCCAAAGTA CACAGGTGTA CGGAAGAGGA AGTGGGGAAA | 50 |
ATGGGTGGCT GAGATTCGTC TCCCCAACAG CCGTGACAGG ATCTGGTTAG | 100 |
GCTCTTTCGA CTCTGCTGAG AAGGCGGCGC GTGCTTTCGA CGCGGCTCTT | 150 |
TACTGTCTTC GTGGCCCCGG AGCACGCTTC AACTTCCCCG ACAATCCTCC | 200 |
GGAGATTCCC GGTGGTCGTT CTCTGACGCC GCAGCAGATT CAGGTCGTAG | 250 |
CTAGCCGTTT CGCCTGCGAG GAGGAGCTAC TACCACCGGA ACAACATCAT | 300 |
CCGTCACCGC CACGTGGCGA CCATAATACC GAGGAAGAAG TGATAATTTC | 350 |
GGCACGTGGG GAAATTAATA GTGGTAGTGG TGGGCCTACG TTAGGGCAAG | 400 |
TTGGGGAAGA TAATAACAAC GAGGGTAATA GTAATGACAC GTCGTCGTAT | 450 |
TGGCCTTTAA TATGGGAGGA GGAGAATTTT GTAGGTCCTC CTAACTCAGA | 500 |
TCATGAGTTC GGTTTTTTCA CAGATGATTC AACCAATTTG TACTTCCCGA | 550 |
CACAACAACA ACAACAACAT CAGCTCTCGT CTGATTTTTA CTATGATGGA | 600 |
GCTTGTGAAG ATGATTTCTC TCATTACAAT ATTAACCTTT GGAATTTCTG | 650 |
A | 700 |
>AT5G21960.1 longest ORF length:216
MDASPKYTGV RKRKWGKWVA EIRLPNSRDR IWLGSFDSAE KAARAFDAAL | 50 |
YCLRGPGARF NFPDNPPEIP GGRSLTPQQI QVVASRFACE EELLPPEQHH | 100 |
PSPPRGDHNT EEEVIISARG EINSGSGGPT LGQVGEDNNN EGNSNDTSSY | 150 |
WPLIWEEENF VGPPNSDHEF GFFTDDSTNL YFPTQQQQQH QLSSDFYYDG | 200 |
ACEDDFSHYN INLWNF | 250 |