fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G21960 Integrase-type DNA-binding superfamily protein (.1)

>AT5G21960.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
NheI G|CTAGC 250


Click here to view TAIR data

>AT5G21960.1 length:651
ATGGATGCAT CCCCAAAGTA CACAGGTGTA CGGAAGAGGA AGTGGGGAAA 
50
ATGGGTGGCT GAGATTCGTC TCCCCAACAG CCGTGACAGG ATCTGGTTAG 
100
GCTCTTTCGA CTCTGCTGAG AAGGCGGCGC GTGCTTTCGA CGCGGCTCTT 
150
TACTGTCTTC GTGGCCCCGG AGCACGCTTC AACTTCCCCG ACAATCCTCC 
200
GGAGATTCCC GGTGGTCGTT CTCTGACGCC GCAGCAGATT CAGGTCGTAG 
250
CTAGCCGTTT CGCCTGCGAG GAGGAGCTAC TACCACCGGA ACAACATCAT 
300
CCGTCACCGC CACGTGGCGA CCATAATACC GAGGAAGAAG TGATAATTTC 
350
GGCACGTGGG GAAATTAATA GTGGTAGTGG TGGGCCTACG TTAGGGCAAG 
400
TTGGGGAAGA TAATAACAAC GAGGGTAATA GTAATGACAC GTCGTCGTAT 
450
TGGCCTTTAA TATGGGAGGA GGAGAATTTT GTAGGTCCTC CTAACTCAGA 
500
TCATGAGTTC GGTTTTTTCA CAGATGATTC AACCAATTTG TACTTCCCGA 
550
CACAACAACA ACAACAACAT CAGCTCTCGT CTGATTTTTA CTATGATGGA 
600
GCTTGTGAAG ATGATTTCTC TCATTACAAT ATTAACCTTT GGAATTTCTG 
650
A
700

>AT5G21960.1 longest ORF length:216
MDASPKYTGV RKRKWGKWVA EIRLPNSRDR IWLGSFDSAE KAARAFDAAL 
50
YCLRGPGARF NFPDNPPEIP GGRSLTPQQI QVVASRFACE EELLPPEQHH 
100
PSPPRGDHNT EEEVIISARG EINSGSGGPT LGQVGEDNNN EGNSNDTSSY 
150
WPLIWEEENF VGPPNSDHEF GFFTDDSTNL YFPTQQQQQH QLSSDFYYDG 
200
ACEDDFSHYN INLWNF
250