fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G22890 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G22890.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 506
EcoRV GAT|ATC 385
NdeI CA|TATG 10
SalI G|TCGAC 471
SmaI CCC|GGG 447


Click here to view TAIR data

>AT5G22890.1 length:1122
ATGCATATAC ATATGATGAA TCGAGATGAG CATATTGCAA AGAAAGTTGA 
50
AGGATCAATC TCTAGCTTCT CCGGGGAGAC CAGTACTTCC TCAAAACAAA 
100
TCTATGTTAA TCCCGTGACC ACGACCGGGA CGAAATCAAT GGAAGACGAC 
150
GACGTTTCAC TCTCTCTTCT ATACAATCTA TCTACCTTAC ATGAAAAAGT 
200
CCATCAGATC CAATCTCTGG TCAGCTTCTA CATGGTATCT ACTAATAACA 
250
TTAACCAATC CTCGGGGTCA ACGTCTTTGG CCGTGGCTAA CATCGGAAGT 
300
TTGGTTCAAG AGATCATCAC GGCTGCTTCA TCCATGTTAT ATACTTGCCA 
350
ACAACTCCAA ATCGGATCTA ACAACAACAA CAACGATATC GATAATGATC 
400
AAACCGTAGA TGCAATGGTT TTGGAGTTTT CCCGACAAGA AACCGACCCG 
450
GGTCATGATT TTGTGCAAGA GTCGACCAAC CTTTTTGGTG TCCAAGAAAG 
500
AGGGCAGATC TCGTTTCCCG ACCAGAATCT TGATTGGTAC AACACCGAAA 
550
CCATAAACCC TAAAAAAGAT AAACATCGTT CTAAACCAAG TTCCGGGAGC 
600
TACGATATAC TGGAGCTAGA CGTAGCGGAC CTACTAGCGA AATACACGCA 
650
TTACTGCCAG ATTTGTGGGA AAGGGTTTAA GAGAGACGCT AATCTAAGGA 
700
TGCACATGAG AGCGCACGGG GATGAGTACA AGACACGTGA GGCCTTGATC 
750
AGCCCAACGA GCCAAGACAA GAAAGGAGGA TACTCGTTAA AGAAACATTA 
800
CTACTCCTGT CCTCAACACG GGTGTAGATG GAACCAGAGG CACGAGAAGT 
850
TTCAACCGTT GAAATCTGTG ATTTGCGCCA AGAATCATTA CAAGAGGAGT 
900
CATTGTCCCA AAATGTATAT GTGCAGGAGA TGTAGTGTGA AGCATTTCTC 
950
GGTTCTGTCT GATCTTAGGA CACACGAGAA GCATTGTGGG GATATAAAGT 
1000
GGGTTTGCTC TTGTGGGACT AAATTTTCTA GGAAAGACAA GCTGATGAGC 
1050
CACGTTTCTT TGTTTTTGGG CCACGTACCG GCACATGGGT CGTCCAAGCC 
1100
GCCGACAATC ACCCTAAAGT AA
1150

>AT5G22890.1 longest ORF length:373
MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD 
50
DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS 
100
LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP 
150
GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS 
200
YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI 
250
SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS 
300
HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS 
350
HVSLFLGHVP AHGSSKPPTI TLK
400