fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G22990 C2H2-like zinc finger protein (.1)

>AT5G22990.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 488
HindIII A|AGCTT 530
NdeI CA|TATG 235, 247, 716
StyI C|C[AT][AT]GG 544


Click here to view TAIR data

>AT5G22990.1 length:975
ATGACTTCAA TCCCAAATGG CTTAAATTCT TATGTTGACG ATACTGTGAA 
50
CATTTGTGGT TTTACTCCCA TCGAAATGAG TTCCAACCTT AGGAATCATG 
100
AGTCTAAGAT GGTTCACTCA ATGTTCAATA CTTCTGACCA CACGAATCAT 
150
CATGGTTTGT TTTCTTCCTC TCGTGTGTTT AATTTTTATC AAGATTCACA 
200
TGTTTCTTCA TCTTCTTTTG GTTTCAACAA TTCACATATG GCTTATCATA 
250
TGAGAAAAAA CATGGTTTCC ACTTTTGGGA TGCCTTGCAT AACTCAAAAC 
300
TCAAATAACC CTCATCTTTC TCAAATCTCT ATTACTCAAA CTATCACAAA 
350
TAGCTATTCT GCTATTGTTC CTACCTATAA TCTTATTACT TCCCAAAATG 
400
AATATCAACG TGCCAAAGAA CCCAACATCT TCAATCCTCC TTTTTACCCT 
450
CCAAATTTTG TTGACAAAAA TGTTGGAAAC CAATGCCAGA TCTTGAATCC 
500
TACACCCCTC AATACCATTT TTCCACATCA AGCTTCCATA TTTCCTAGGA 
550
ATGTAGACAA ATTTTCTTTT TCACCAAAAC AGAACCCTCA CCAATATGTT 
600
TCGTATCGCC AACCCCTGAA AAGACATTGT AGACCAACCA AAAAATTTGA 
650
AAATACTTTT AGTGATTTTG ATTCTGGAAA AGATATTGAA TACGATGGTC 
700
GGACGCATAG CTTACCATAT GAGAAATACG GTCCATATAC ATGTCCCAAA 
750
TGTAACAGTG TGTTTGACAC TTCACAAAAG TTTGCTGCAC ATATATCATC 
800
GATGCACTAC AAAAATGAGT CCATAGAAGA GAAATTTAAG AGATATAATG 
850
CAAGGAACAA AAAGAGATTA CGTAAAAGAA ACCAAATGAT CCATGAAGAA 
900
TCTAACAATA TCCAACCAGA AGAGATAGTT GCAGAGGAAA GCGGAGGCGA 
950
TAACAACATA GCAAGTAGCA AGTGA
1000

>AT5G22990.1 longest ORF length:324
MTSIPNGLNS YVDDTVNICG FTPIEMSSNL RNHESKMVHS MFNTSDHTNH 
50
HGLFSSSRVF NFYQDSHVSS SSFGFNNSHM AYHMRKNMVS TFGMPCITQN 
100
SNNPHLSQIS ITQTITNSYS AIVPTYNLIT SQNEYQRAKE PNIFNPPFYP 
150
PNFVDKNVGN QCQILNPTPL NTIFPHQASI FPRNVDKFSF SPKQNPHQYV 
200
SYRQPLKRHC RPTKKFENTF SDFDSGKDIE YDGRTHSLPY EKYGPYTCPK 
250
CNSVFDTSQK FAAHISSMHY KNESIEEKFK RYNARNKKRL RKRNQMIHEE 
300
SNNIQPEEIV AEESGGDNNI ASSK
350