fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G23090 NF-YB13 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4)

>AT5G23090.4 CDS map

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Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 3
BglII A|GATCT 120
PvuII CAG|CTG 368
SacI GAGCT|C 341
StyI C|C[AT][AT]GG 29


Click here to view TAIR data

>AT5G23090.4 length:477
ATGGATCCAA TGGATATAGT CGGCAAATCC AAGGAAGACG CTTCTCTTCC 
50
AAAAGCTACG ATGACTAAAA TTATAAAGGA GATGTTACCA CCAGATGTTC 
100
GTGTTGCAAG AGATGCTCAA GATCTTCTCA TTGAATGTTG TGTAGAGTTT 
150
ATAAATCTTG TATCTTCAGA ATCTAATGAT GTTTGTAACA AAGAGGATAA 
200
ACGGACGATT GCTCCTGAGC ATGTTCTCAA GGCATTACAG GTTCTTGGTT 
250
TTGGAGAATA CATTGAAGAA GTCTATGCTG CGTATGAGCA ACATAAGTAT 
300
GAAACAATGG ACACACAGAG GAGCGTGAAA TGGAACCCTG GAGCTCAAAT 
350
GACTGAGGAG GAAGCAGCAG CTGAGCAACA ACGTATGTTT GCAGAAGCAC 
400
GTGCAAGAAT GAATGGAGGT GTTTCGGTTC CTCAACCTGA ACATCCAGAA 
450
ACTGACCAGA GAAGTCCGCA AAGCTAA
500

>AT5G23090.4 longest ORF length:158
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF 
50
INLVSSESND VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY 
100
ETMDTQRSVK WNPGAQMTEE EAAAEQQRMF AEARARMNGG VSVPQPEHPE 
150
TDQRSPQS
200