fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G23280 TCP7 TCP family transcription factor (.1)

>AT5G23280.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 644
PvuII CAG|CTG 491
SacI GAGCT|C 551
SmaI CCC|GGG 718


Click here to view TAIR data

>AT5G23280.1 length:753
ATGTCTATTA ACAACAACAA CAACAACAAC AACAATAACA ACGATGGTCT 
50
TATGATCTCA TCAAACGGAG CTTTAATCGA ACAACAACCA TCAGTCGTTG 
100
TGAAGAAACC ACCGGCGAAA GATCGACATA GCAAAGTCGA TGGAAGAGGG 
150
AGAAGAATCC GTATGCCGAT TATATGTGCT GCTCGTGTTT TTCAGCTAAC 
200
GAGAGAGCTT GGTCATAAGT CAGATGGCCA AACAATTGAA TGGTTACTTC 
250
GTCAAGCAGA GCCTTCTATT ATAGCTGCAA CAGGAACTGG TACAACTCCA 
300
GCGAGTTTCT CAACTGCTTC TGTCTCTATC CGTGGAGCCA CCAATTCTAC 
350
TTCTTTAGAT CATAAACCCA CTTCTTTACT TGGTGGTACG TCACCGTTTA 
400
TACTTGGGAA ACGTGTTAGA GCTGATGAGG ATAGTAATAA TAGTCATAAT 
450
CATAGTTCTG TTGGTAAAGA TGAGACCTTT ACGACAACAC CAGCTGGGTT 
500
TTGGGCTGTT CCGGCGAGGC CGGATTTTGG ACAAGTTTGG AGTTTTGCTG 
550
GAGCTCCACA AGAGATGTTT TTACAACAAC AACATCATCA TCAGCAACCA 
600
TTGTTTGTTC ATCAGCAACA GCAACAACAA GCTGCAATGG GTGAAGCTTC 
650
TGCTGCTAGA GTTGGGAATT ATCTTCCGGG TCATCTTAAT TTGCTTGCTT 
700
CTTTATCCGG TGGATCTCCC GGGTCGGATC GAAGAGAGGA AGATCCACGT 
750
TAA
800

>AT5G23280.1 longest ORF length:250
MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG 
50
RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP 
100
ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN 
150
HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP 
200
LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR 
250