fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G23650 Homeodomain-like transcriptional regulator (.1)

>AT5G23650.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NdeI CA|TATG 705, 761, 777, 910
StyI C|C[AT][AT]GG 361


Click here to view TAIR data

>AT5G23650.1 length:1014
ATGAATTTAG GACAGGAAAT TAGTGTCGGA TCGTCTTGGA GCAAGGATGA 
50
TGATATTGCT TTCGAGAAAG CCCTTGCAAT TTATAACGAT AAAACAGAGA 
100
TTCGTTGGAA AAAAATTGCT ACAGTTGTTC CGGGAAAAAC TTTAGAACAA 
150
GTTATAGAGC ATTACAACAT TTTAGCTCGT GATGTTATGT TGATTGAATC 
200
TGGATGTGTA CGTCTTCCAG ATTATGATGA TTTTTTAGAA GAACCAAATC 
250
ACAATGCTTT TGGTAAAGAA AGAAGCATAT TGGAAGGTGG CAACGATCGC 
300
AAATATGAGT CTAAACACAA AGGTAAATCA AAACTAAAGC AAAAACGACG 
350
AAGGGGTGTT CCTTGGAAGC CTTTTGAACA CAGACAATTT CTGCATGGTT 
400
TGAAAAAATA TGGGAAAGGT GATTGGCGTA GTATTTCTCG TCACTGTGTA 
450
GTGACAAGAA CATCAACTCA GGTTGCAAGT CATGCTCAAA AATACTTTGC 
500
ACATATCAAC TCAGAGGATA AAAAGAGAAA GAGGCCAAGC ATTCATGACA 
550
TCACTATTGC GGAAAACAAA AGTATCTCAA CAAAACAAAG ACCAATCACA 
600
TGGCAAAAAA TAAACAACAA TGGTGCTACT GCTTCCAACA CTCAAGCCAA 
650
TCAAACCACT TTGCAACCAT CACTTGACAT TCCTATATAT GGTACACACA 
700
ACAACATATG GAATGCACAA GCCACTCAAG TCATTTCACA GCCATCACAA 
750
AACCATCCTA CATATGATGC ACCCATCATA TGGAACACAC AAGTCGCTTC 
800
GCAACCATCG GCCAATATTC CTATGTATGG AACGTCCACC ATAAGTCAAC 
850
CAATGGTTGG ACCAATGCTC TCACCTTTTG GAACAAACTT GAACCACTTG 
900
GCTCCATCTC ATATGACTTC TGGAGTTCAA CATGATTCAG TACCTTACTA 
950
CTCAGGTCCT AGTGCACCGA TCAACATGGA TTCAATACCA TACAACATTG 
1000
ACTTATATAA CTAG
1050

>AT5G23650.1 longest ORF length:337
MNLGQEISVG SSWSKDDDIA FEKALAIYND KTEIRWKKIA TVVPGKTLEQ 
50
VIEHYNILAR DVMLIESGCV RLPDYDDFLE EPNHNAFGKE RSILEGGNDR 
100
KYESKHKGKS KLKQKRRRGV PWKPFEHRQF LHGLKKYGKG DWRSISRHCV 
150
VTRTSTQVAS HAQKYFAHIN SEDKKRKRPS IHDITIAENK SISTKQRPIT 
200
WQKINNNGAT ASNTQANQTT LQPSLDIPIY GTHNNIWNAQ ATQVISQPSQ 
250
NHPTYDAPII WNTQVASQPS ANIPMYGTST ISQPMVGPML SPFGTNLNHL 
300
APSHMTSGVQ HDSVPYYSGP SAPINMDSIP YNIDLYN
350