|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G25190 | ESE3 | ethylene and salt inducible 3, Integrase-type DNA-binding superfamily protein (.1) |
>AT5G25190.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 337 |
| AciI | C|CGC | 246, 321, 336 |
| AluI | AG|CT | 172, 225, 486, 510 |
| AlwNI | CAGNNN|CTG | 538 |
| ApoI | Pu|AATTPy | 65, 441 |
| AvaI | C|PyCGPuG | 168 |
| BanII | GPuGCPy|C | 48, 173 |
| BfaI | C|TAG | 98, 150 |
| BsaBI | GATNN|NNATC | 333 |
| BsaJI | C|CNNGG | 338 |
| BsiHKAI | G[AT]GC[AT]|C | 173 |
| BsoBI | C|PyCGPuG | 168 |
| Bsp1286I | G[GAT]GC[CAT]|C | 48, 173 |
| BstF5I | GGATGNN| | 124 |
| BstUI | CG|CG | 337 |
| BtgI | C|CPuPyGG | 338 |
| DdeI | C|TNAG | 532 |
| DpnI | GA-CH3|TC | 327, 403, 461 |
| DpnII | |GATC | 327, 403, 461 |
| EcoO109I | PuG|GNCCPy | 134 |
| Fnu4HI | GC|NGC | 126, 147, 488 |
| HaeIII | GG|CC | 133, 164, 447 |
| HindIII | A|AGCTT | 226 |
| HinfI | G|ANTC | 91 |
| Hpy188I | TCN|GA | 60, 533 |
| Hpy99I | CG[AT]CG| | 140 |
| HpyCH4III | ACN|GT | 343, 349, 499 |
| HpyCH4IV | A|CGT | 104 |
| HpyCH4V | TG|CA | 124, 432 |
| MboI | |GATC | 327, 403, 461 |
| MspA1I | C[AC]G|C[GT]G | 116, 338 |
| MwoI | GCNNNNN|NNGC | 25, 123 |
| NlaIII | CATG| | 268 |
| NlaIV | GGN|NCC | 502 |
| RsaI | GT|AC | 177 |
| SacI | GAGCT|C | 173 |
| SacII | CCGC|GG | 338 |
| Sau3AI | |GATC | 327, 403, 461 |
| Sau96I | G|GNCC | 133, 165 |
| Taqƒ¿I | T|CGA | 22, 468 |
| TfiI | G|A[AT]TC | 91 |
| TseI | G|C[AT]GC | 126, 488 |
| Tsp45I | |GT[CG]AC | 70, 346, 354 |
| Tsp509I | |AATT | 64, 182, 440 |
| TspRI | NNCA[CG]TGNN| | 346 |
Click here to view TAIR data
>AT5G25190.1 length:546
ATGGCACGAC CACAACAACG CTTTCGAGGC GTTAGACAGA GGCATTGGGG | 50 |
CTCTTGGGTC TCCGAAATTC GTCACCCTCT CTTGAAAACA AGAATCTGGC | 100 |
TAGGGACGTT TGAGACAGCG GAGGATGCAG CAAGGGCCTA CGACGAGGCG | 150 |
GCTAGGCTAA TGTGTGGCCC GAGAGCTCGT ACTAATTTCC CATACAACCC | 200 |
TAATGCCATT CCTACTTCCT CTTCCAAGCT TCTATCAGCA ACTCTTACCG | 250 |
CTAAACTCCA CAAATGCTAC ATGGCTTCTC TTCAAATGAC CAAGCAAACG | 300 |
CAAACACAAA CGCAAACGCA GACCGCAAGA TCACAATCCG CGGACAGTGA | 350 |
CGGTGTGACG GCTAACGAAA GTCATTTGAA CAGAGGAGTA ACGGAGACGA | 400 |
CAGAGATCAA GTGGGAAGAT GGAAATGCGA ATATGCAACA GAATTTTAGG | 450 |
CCATTGGAGG AAGATCATAT CGAGCAAATG ATTGAGGAGC TGCTTCACTA | 500 |
CGGTTCCATT GAGCTTTGCT CTGTTTTACC AACTCAGACG CTGTGA | 550 |
>AT5G25190.1 longest ORF length:181
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA | 50 |
ARLMCGPRAR TNFPYNPNAI PTSSSKLLSA TLTAKLHKCY MASLQMTKQT | 100 |
QTQTQTQTAR SQSADSDGVT ANESHLNRGV TETTEIKWED GNANMQQNFR | 150 |
PLEEDHIEQM IEELLHYGSI ELCSVLPTQT L | 200 |