Locus |
Common name |
Short description |
AT5G25390 |
SHN3, SHN2 |
shine3, Integrase-type DNA-binding superfamily protein (.1.2) |
>AT5G25390.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
541 |
HindIII
| A|AGCTT |
388 |
HpaI
| GTT|AAC |
412 |
StyI
| C|C[AT][AT]GG |
206 |
Click here to view TAIR data
>AT5G25390.1 length:561
ATGGTACATT CGAAGAAGTT CCGAGGTGTC CGCCAGCGTC AGTGGGGTTC | 50 |
TTGGGTTTCT GAGATTCGTC ATCCTCTCTT AGTGTGGCTA GGAACATTCG | 100 |
ACACGGCGGA AACAGCGGCT AGAGCCTACG ACCAAGCCGC GGTTCTAATG | 150 |
AACGGCCAGA GCGCGAAGAC TAACTTCCCC GTCATCAAAT CGAACGGTTC | 200 |
AAATTCCTTG GAGATTAACT CTGCGTTAAG GTCTCCCAAA TCATTATCGG | 250 |
AACTATTGAA CGCTAAGCTA AGGAAGAACT GTAAAGACCA GACACCGTAT | 300 |
CTGACGTGTC TCCGCCTCGA CAACGACAGC TCACACATCG GCGTCTGGCA | 350 |
GAAACGCGCC GGGTCAAAAA CGAGTCCAAA CTGGGTCAAG CTTGTTGAAC | 400 |
TAGGTGACAA AGTTAACGCA CGTCCCGGTG GTGATATTGA GACTAATAAG | 450 |
ATGAAGGTAC GAAACGAAGA CGTTCAGGAA GATGATCAAA TGGCGATGCA | 500 |
GATGATCGAG GAGTTGCTTA ACTGGACCTG TCCTGGATCT GGATCCATTG | 550 |
CACAGGTCTA A | 600 |
>AT5G25390.1 longest ORF length:186
MVHSKKFRGV RQRQWGSWVS EIRHPLLVWL GTFDTAETAA RAYDQAAVLM | 50 |
NGQSAKTNFP VIKSNGSNSL EINSALRSPK SLSELLNAKL RKNCKDQTPY | 100 |
LTCLRLDNDS SHIGVWQKRA GSKTSPNWVK LVELGDKVNA RPGGDIETNK | 150 |
MKVRNEDVQE DDQMAMQMIE ELLNWTCPGS GSIAQV | 200 |
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