fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G25390 SHN3, SHN2 shine3, Integrase-type DNA-binding superfamily protein (.1.2)

>AT5G25390.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 541
HindIII A|AGCTT 388
HpaI GTT|AAC 412
StyI C|C[AT][AT]GG 206


Click here to view TAIR data

>AT5G25390.1 length:561
ATGGTACATT CGAAGAAGTT CCGAGGTGTC CGCCAGCGTC AGTGGGGTTC 
50
TTGGGTTTCT GAGATTCGTC ATCCTCTCTT AGTGTGGCTA GGAACATTCG 
100
ACACGGCGGA AACAGCGGCT AGAGCCTACG ACCAAGCCGC GGTTCTAATG 
150
AACGGCCAGA GCGCGAAGAC TAACTTCCCC GTCATCAAAT CGAACGGTTC 
200
AAATTCCTTG GAGATTAACT CTGCGTTAAG GTCTCCCAAA TCATTATCGG 
250
AACTATTGAA CGCTAAGCTA AGGAAGAACT GTAAAGACCA GACACCGTAT 
300
CTGACGTGTC TCCGCCTCGA CAACGACAGC TCACACATCG GCGTCTGGCA 
350
GAAACGCGCC GGGTCAAAAA CGAGTCCAAA CTGGGTCAAG CTTGTTGAAC 
400
TAGGTGACAA AGTTAACGCA CGTCCCGGTG GTGATATTGA GACTAATAAG 
450
ATGAAGGTAC GAAACGAAGA CGTTCAGGAA GATGATCAAA TGGCGATGCA 
500
GATGATCGAG GAGTTGCTTA ACTGGACCTG TCCTGGATCT GGATCCATTG 
550
CACAGGTCTA A
600

>AT5G25390.1 longest ORF length:186
MVHSKKFRGV RQRQWGSWVS EIRHPLLVWL GTFDTAETAA RAYDQAAVLM 
50
NGQSAKTNFP VIKSNGSNSL EINSALRSPK SLSELLNAKL RKNCKDQTPY 
100
LTCLRLDNDS SHIGVWQKRA GSKTSPNWVK LVELGDKVNA RPGGDIETNK 
150
MKVRNEDVQE DDQMAMQMIE ELLNWTCPGS GSIAQV
200