|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G25390 | SHN3, SHN2 | shine3, Integrase-type DNA-binding superfamily protein (.1.2) |
>AT5G25390.2 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 550 |
| HindIII | A|AGCTT | 397 |
| HpaI | GTT|AAC | 421 |
| StyI | C|C[AT][AT]GG | 215 |
Click here to view TAIR data
>AT5G25390.2 length:570
ATGGTACATT CGAAGAAGTT CCGAGGTGTC CGCCAGCGTC AGTGGGGTTC | 50 |
TTGGGTTTCT GAGATTCGTC ATCCTCTCTT GAAGAGAAGA GTGTGGCTAG | 100 |
GAACATTCGA CACGGCGGAA ACAGCGGCTA GAGCCTACGA CCAAGCCGCG | 150 |
GTTCTAATGA ACGGCCAGAG CGCGAAGACT AACTTCCCCG TCATCAAATC | 200 |
GAACGGTTCA AATTCCTTGG AGATTAACTC TGCGTTAAGG TCTCCCAAAT | 250 |
CATTATCGGA ACTATTGAAC GCTAAGCTAA GGAAGAACTG TAAAGACCAG | 300 |
ACACCGTATC TGACGTGTCT CCGCCTCGAC AACGACAGCT CACACATCGG | 350 |
CGTCTGGCAG AAACGCGCCG GGTCAAAAAC GAGTCCAAAC TGGGTCAAGC | 400 |
TTGTTGAACT AGGTGACAAA GTTAACGCAC GTCCCGGTGG TGATATTGAG | 450 |
ACTAATAAGA TGAAGGTACG AAACGAAGAC GTTCAGGAAG ATGATCAAAT | 500 |
GGCGATGCAG ATGATCGAGG AGTTGCTTAA CTGGACCTGT CCTGGATCTG | 550 |
GATCCATTGC ACAGGTCTAA | 600 |
>AT5G25390.2 longest ORF length:189
MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA | 50 |
VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ | 100 |
TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE | 150 |
TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV | 200 |