fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G25790 Tesmin/TSO1-like CXC domain-containing protein (.1)

>AT5G25790.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 43
HpaI GTT|AAC 727
PstI CTGCA|G 549


Click here to view TAIR data

>AT5G25790.1 length:1380
ATGGAAGATT TGAGTAATCA GAATCTCCTC CCGCGTCAAT CAGATATCTC 
50
CATCCCTGCG GAGAAGATGG ATTCGTTTCA AAAGTCGCTA GAACCTCCGC 
100
CGTGTTCTCC GGTGAAATCT TCTCAACAAT CAGAAACGGA AGTCACACCG 
150
CCTCAGAAAC CACCGCTTCA CCAATTTGGT CACAACCAAG TTCAGAAGAA 
200
TCGAGTGAGC AATCAAGATC CATCGACCTC ACGAAGACAT AATGAAGTTG 
250
AATCGAAAGA GAATACTCCA AATAAACAAC AAAAACATTG CAATTGCAAA 
300
AACTCAAAGT GTTTGAAACT GTATTGTGAA TGCTTTGCTT CTGGATCTTA 
350
TTGTAATGGT TGTAACTGTG TGAATTGTCA CAACAAATTG GAGAATGAGT 
400
CTTCGAGACA AGTAGCTATC TCGGGGATCT TAGAGCGTAA CCCTGATGCG 
450
TTTAAGCCCA AGATTGCTGG TAGTCCTCAT GGAATGAAAG ATTTGCAGGA 
500
GAATGTGCAG CAAGTGTTGC TTATTGGAAA GCACAGCAAA GGATGCCACT 
550
GCAGGAAATC AGGATGTCTC AAGAAGTACT GTGAGTGTTA CCAGGCGAAT 
600
ATTCTATGTT CGGAGAATTG TAGATGTCAA GACTGCAAGA ACTTTGAAGG 
650
AAGCGAAGAA AGAAAAGCTC TTCTTCATGG ATCTCAGGTC TCGGATACCT 
700
ACATACAACA GATGACCAAT GCGGCTGTTA ACCGTGCCAT CGACATGTCT 
750
GCTTATCTGT ACCCTCCTGA ATCAAGAAAG AGAAAGAGCA AGGACATTTC 
800
AGATTCTGTA GTTTCATCAT ACGGTGTCCA ATACCAGAGG GCAAACCACG 
850
TTAGAAGAAA TGGTGAAAAT TCTCTATTTT CACTCCCTAA CAACAAGGCC 
900
GTGTCCGGAT CTACCACAAG TGCTTACAGG TCTTCTTGGT CAAATACATT 
950
CCAACCACAT CATGTCAGAG AGCTATGTTC ACTTTTGGTC TCAAACTCGG 
1000
TTGATGTAGC AAATAAATTG TCAGACAAAG GGAGGAAGAA CGACAAAGGC 
1050
CCTTCTTCAC TTGATGGAGC CCAAAGAGTT GCTAATGAGA TCAATGACTC 
1100
ACCAGATTGT GTCCTTGATG CTAATAGAAT GGACGAGAAG CCTATATCTC 
1150
CCGCAACACG TGCATTGATG TGTGACGAAG AACATGAGAT CGGGTCAGAG 
1200
AAAGAGACAT CGGCCCGAGT GAAAACAAGC CAAGAGAAAG AAGACACAGA 
1250
CACAAGCTCG GGGATTTACT TAGAGCAAGA AAGACAGATA TTGTCAATCT 
1300
TCAGGGACTA TCTCATTCAG CTCTCAAACC GTGCGAGGAT AAATGGTAAA 
1350
AATATCAAAA GCAACACAAA TCCAAGTTGA 
1400

>AT5G25790.1 longest ORF length:459
MEDLSNQNLL PRQSDISIPA EKMDSFQKSL EPPPCSPVKS SQQSETEVTP 
50
PQKPPLHQFG HNQVQKNRVS NQDPSTSRRH NEVESKENTP NKQQKHCNCK 
100
NSKCLKLYCE CFASGSYCNG CNCVNCHNKL ENESSRQVAI SGILERNPDA 
150
FKPKIAGSPH GMKDLQENVQ QVLLIGKHSK GCHCRKSGCL KKYCECYQAN 
200
ILCSENCRCQ DCKNFEGSEE RKALLHGSQV SDTYIQQMTN AAVNRAIDMS 
250
AYLYPPESRK RKSKDISDSV VSSYGVQYQR ANHVRRNGEN SLFSLPNNKA 
300
VSGSTTSAYR SSWSNTFQPH HVRELCSLLV SNSVDVANKL SDKGRKNDKG 
350
PSSLDGAQRV ANEINDSPDC VLDANRMDEK PISPATRALM CDEEHEIGSE 
400
KETSARVKTS QEKEDTDTSS GIYLEQERQI LSIFRDYLIQ LSNRARINGK 
450
NIKSNTNPS
500