fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G25810 TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1)

>AT5G25810.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
NheI G|CTAGC 34
SacI GAGCT|C 481
StyI C|C[AT][AT]GG 160
XhoI C|TCGAG 317


Click here to view TAIR data

>AT5G25810.1 length:657
ATGATAGCTT CAGAGAGTAC CAAGAGCTGG GAAGCTAGCG CAGTCAGACA 
50
AGAGAATGAA GAAGAGAAGA AGAAACCGGT TAAAGATTCC GGTAAGCATC 
100
CGGTTTATCG GGGTGTCCGA AAGAGGAACT GGGGAAAATG GGTGTCCGAG 
150
ATACGTGAAC CTAGGAAAAA ATCCCGAATA TGGCTAGGAA CGTTTCCTTC 
200
CCCGGAGATG GCGGCGCGTG CACACGACGT AGCCGCTCTT AGCATCAAAG 
250
GAGCCTCCGC TATACTCAAT TTCCCTGACC TAGCCGGCTC TTTCCCACGC 
300
CCTAGCTCGC TTAGCCCTCG AGACATCCAG GTCGCGGCTC TCAAAGCCGC 
350
ACACATGGAG ACCTCACAGT CTTTTTCTTC TTCTTCTTCT TTAACGTTTT 
400
CATCTTCACA GTCTTCTTCT TCGCTAGAGT CTCTCGTGTC TTCCTCCGCG 
450
ACCGGCTCCG AGGAGCTAGG GGAGATTGTA GAGCTCCCAA GTTTGGGATC 
500
GAGCTATGAT GGTTTGACTC AGCTAGGTAA CGAGTTTATA TTCTCTGACT 
550
CCGCAGACTT ATGGCCTTAT CCACCGCAAT GGTCAGAAGG TGATTACCAA 
600
ATGATTCCTG CCTCGTTATC ACAAGATTGG GATCTTCAAG GACTGTATAA 
650
TTATTAA
700

>AT5G25810.1 longest ORF length:218
MIASESTKSW EASAVRQENE EEKKKPVKDS GKHPVYRGVR KRNWGKWVSE 
50
IREPRKKSRI WLGTFPSPEM AARAHDVAAL SIKGASAILN FPDLAGSFPR 
100
PSSLSPRDIQ VAALKAAHME TSQSFSSSSS LTFSSSQSSS SLESLVSSSA 
150
TGSEELGEIV ELPSLGSSYD GLTQLGNEFI FSDSADLWPY PPQWSEGDYQ 
200
MIPASLSQDW DLQGLYNY
250