Locus |
Common name |
Short description |
AT5G25810 |
TNY, TINY |
TINY, Integrase-type DNA-binding superfamily protein (.1) |
>AT5G25810.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI
Name |
Recognition sequence |
Cut positions |
NheI
| G|CTAGC |
34 |
SacI
| GAGCT|C |
481 |
StyI
| C|C[AT][AT]GG |
160 |
XhoI
| C|TCGAG |
317 |
Click here to view TAIR data
>AT5G25810.1 length:657
ATGATAGCTT CAGAGAGTAC CAAGAGCTGG GAAGCTAGCG CAGTCAGACA | 50 |
AGAGAATGAA GAAGAGAAGA AGAAACCGGT TAAAGATTCC GGTAAGCATC | 100 |
CGGTTTATCG GGGTGTCCGA AAGAGGAACT GGGGAAAATG GGTGTCCGAG | 150 |
ATACGTGAAC CTAGGAAAAA ATCCCGAATA TGGCTAGGAA CGTTTCCTTC | 200 |
CCCGGAGATG GCGGCGCGTG CACACGACGT AGCCGCTCTT AGCATCAAAG | 250 |
GAGCCTCCGC TATACTCAAT TTCCCTGACC TAGCCGGCTC TTTCCCACGC | 300 |
CCTAGCTCGC TTAGCCCTCG AGACATCCAG GTCGCGGCTC TCAAAGCCGC | 350 |
ACACATGGAG ACCTCACAGT CTTTTTCTTC TTCTTCTTCT TTAACGTTTT | 400 |
CATCTTCACA GTCTTCTTCT TCGCTAGAGT CTCTCGTGTC TTCCTCCGCG | 450 |
ACCGGCTCCG AGGAGCTAGG GGAGATTGTA GAGCTCCCAA GTTTGGGATC | 500 |
GAGCTATGAT GGTTTGACTC AGCTAGGTAA CGAGTTTATA TTCTCTGACT | 550 |
CCGCAGACTT ATGGCCTTAT CCACCGCAAT GGTCAGAAGG TGATTACCAA | 600 |
ATGATTCCTG CCTCGTTATC ACAAGATTGG GATCTTCAAG GACTGTATAA | 650 |
TTATTAA | 700 |
>AT5G25810.1 longest ORF length:218
MIASESTKSW EASAVRQENE EEKKKPVKDS GKHPVYRGVR KRNWGKWVSE | 50 |
IREPRKKSRI WLGTFPSPEM AARAHDVAAL SIKGASAILN FPDLAGSFPR | 100 |
PSSLSPRDIQ VAALKAAHME TSQSFSSSSS LTFSSSQSSS SLESLVSSSA | 150 |
TGSEELGEIV ELPSLGSSYD GLTQLGNEFI FSDSADLWPY PPQWSEGDYQ | 200 |
MIPASLSQDW DLQGLYNY | 250 |
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