fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G25830 GATA12 GATA transcription factor 12 (.1)

>AT5G25830.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
ApaI GGGCC|C 711, 869
EcoRI G|AATTC 19
SacI GAGCT|C 841
SalI G|TCGAC 326
XhoI C|TCGAG 301


Click here to view TAIR data

>AT5G25830.1 length:996
ATGGAAGATG AAGCACATGA ATTCTTCCAC ACATCTGATT TTGCCGTTGA 
50
TGACCTTTTA GTTGATTTCT CTAACGATGA TGACGAAGAA AACGATGTTG 
100
TTGCTGATTC CACCACTACC ACCACCATAA CCGACAGCTC TAACTTCTCC 
150
GCTGCTGATC TTCCCAGTTT CCACGGTGAT GTTCAAGACG GCACTAGCTT 
200
CTCCGGTGAC CTTTGTATAC CTTCTGATGA TTTGGCTGAT GAGTTAGAGT 
250
GGCTTTCGAA CATTGTGGAT GAATCATTGT CGCCTGAAGA TGTACACAAG 
300
CTCGAGCTAA TATCCGGTTT TAAGAGTCGA CCGGACCCGA AATCCGATAC 
350
CGGAAGCCCG GAAAACCCGA ATAGCAGCAG TCCGATTTTT ACTACCGACG 
400
TTTCTGTACC GGCCAAAGCT AGAAGCAAAC GCTCACGCGC CGCTGCGTGT 
450
AATTGGGCCT CACGTGGGCT TCTCAAGGAA ACGTTTTACG ACAGTCCTTT 
500
CACCGGAGAA ACCATTCTCT CTAGCCAACA ACACTTGTCT CCGCCAACCT 
550
CGCCGCCTTT GTTGATGGCT CCGCTAGGGA AAAAGCAAGC CGTTGATGGA 
600
GGACACCGAC GGAAGAAGGA TGTTTCTTCA CCGGAGTCTG GTGGCGCAGA 
650
GGAGAGACGG TGTCTCCACT GCGCCACGGA TAAGACTCCG CAATGGCGGA 
700
CAGGCCCAAT GGGCCCGAAG ACGTTGTGCA ACGCTTGCGG TGTTAGGTAC 
750
AAATCGGGAC GTTTAGTGCC GGAGTATCGG CCCGCGGCGA GTCCGACGTT 
800
TGTGCTGGCG AAACACTCAA ATTCTCATCG GAAAGTTATG GAGCTCCGGC 
850
GACAGAAGGA GATGAGTAGG GCCCATCATG AGTTCATACA TCACCATCAC 
900
GGTACGGACA CTGCCATGAT TTTCGACGTT TCATCGGACG GTGATGATTA 
950
CTTGATCCAC CACAACGTTG GCCCAGATTT CAGACAGCTT ATTTGA
1000

>AT5G25830.1 longest ORF length:331
MEDEAHEFFH TSDFAVDDLL VDFSNDDDEE NDVVADSTTT TTITDSSNFS 
50
AADLPSFHGD VQDGTSFSGD LCIPSDDLAD ELEWLSNIVD ESLSPEDVHK 
100
LELISGFKSR PDPKSDTGSP ENPNSSSPIF TTDVSVPAKA RSKRSRAAAC 
150
NWASRGLLKE TFYDSPFTGE TILSSQQHLS PPTSPPLLMA PLGKKQAVDG 
200
GHRRKKDVSS PESGGAEERR CLHCATDKTP QWRTGPMGPK TLCNACGVRY 
250
KSGRLVPEYR PAASPTFVLA KHSNSHRKVM ELRRQKEMSR AHHEFIHHHH 
300
GTDTAMIFDV SSDGDDYLIH HNVGPDFRQL I
350