fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G27910 NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1)

>AT5G27910.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
PvuII CAG|CTG 25


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>AT5G27910.1 length:564
ATGGAGAACA ACAACGGCAA CAACCAGCTG CCACCGAAAG GTAACGAGCA 
50
ACTGAAGAGT TTCTGGTCAA AAGAGATGGA AGGTAACTTA GATTTCAAAA 
100
ATCACGACCT TCCTATAACT CGTATCAAGA AGATTATGAA GTATGATCCG 
150
GATGTGACTA TGATAGCTAG TGAGGCTCCA ATCCTCCTCT CGAAAGCATG 
200
TGAGATGTTT ATCATGGATC TCACGATGCG TTCGTGGCTC CATGCTCAGG 
250
AAAGCAAACG AGTCACGCTA CAGAAATCTA ATGTCGATGC CGCAGTGGCT 
300
CAAACTGTTA TCTTTGATTT CTTGCTTGAT GATGACATTG AGGTAAAGAG 
350
AGAGTCTGTT GCCGCCGCTG CTGATCCTGT GGCCATGCCA CCTATTGACG 
400
ATGGAGAGCT GCCTCCAGGA ATGGTAATTG GAACTCCTGT TTGTTGTAGT 
450
CTTGGAATCC ACCAACCACA ACCACAAATG CAGGCATGGC CTGGAGCTTG 
500
GACCTCGGTG TCTGGTGAGG AGGAAGAAGC GCGTGGGAAA AAAGGAGGTG 
550
ACGACGGAAA CTAA
600

>AT5G27910.1 longest ORF length:187
MENNNGNNQL PPKGNEQLKS FWSKEMEGNL DFKNHDLPIT RIKKIMKYDP 
50
DVTMIASEAP ILLSKACEMF IMDLTMRSWL HAQESKRVTL QKSNVDAAVA 
100
QTVIFDFLLD DDIEVKRESV AAAADPVAMP PIDDGELPPG MVIGTPVCCS 
150
LGIHQPQPQM QAWPGAWTSV SGEEEEARGK KGGDDGN
200