fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G28530 FRS10 FAR1-related sequence 10 (.1)

>AT5G28530.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
KpnI GGTAC|C 903
NheI G|CTAGC 1162
SpeI A|CTAGT 889
StyI C|C[AT][AT]GG 328


Click here to view TAIR data

>AT5G28530.1 length:2058
ATGGCGTTGA AGCCATTGAA CAACATCTGG ATTCGTCGTC AACAATGTCC 
50
TTGTGGTGAT TGGAAATGCT ACATCAGACT CGAAGAAGAC GAATCAACAA 
100
TAACAAAAAG CGAAATCGAA TCAACACCAA CACCAACATC ACAATACGAT 
150
ACTGTGTTTA CACCATACGT AGGTCAAATC TTCACCACAG ACGATGAAGC 
200
ATTTGAGTAT TACAGTACAT TCGCTAGAAA GAGTGGTTTC TCGATTCGTA 
250
AAGCACGATC TACAGAGAGT CAGAATCTAG GTGTTTATAG AAGAGATTTC 
300
GTTTGTTATC GTTCTGGTTT TAATCAACCT AGGAAGAAAG CTAATGTAGA 
350
GCATCCAAGA GAGCGTAAGT CTGTTAGATG TGGTTGTGAT GGTAAGTTGT 
400
ATTTGACTAA AGAAGTTGTT GATGGTGTTA GTCATTGGTA TGTTTCACAG 
450
TTTAGTAATG TTCATAATCA TGAGCTTTTG GAAGATGATC AAGTTAGGTT 
500
GCTTCCTGCT TATAGGAAGA TTCAGCAAAG TGATCAGGAG AGGATTCTTT 
550
TGTTGTCGAA AGCGGGGTTT CCGGTTAATC GGATTGTTAA GTTGTTGGAG 
600
TTAGAGAAAG GTGTTGTGAG TGGGCAGTTA CCGTTTATTG AGAAAGATGT 
650
TAGGAATTTT GTTAGAGCTT GTAAGAAGAG TGTTCAAGAG AATGATGCTT 
700
TTATGACTGA GAAGCGGGAG AGTGATACGT TGGAGCTTCT TGAGTGTTGT 
750
AAAGGTTTGG CTGAGAGAGA TATGGATTTT GTTTATGATT GTACTTCTGA 
800
TGAGAATCAG AAAGTTGAGA ATATTGCTTG GGCTTATGGA GATTCTGTTC 
850
GGGGTTACTC TTTGTTTGGG GATGTGGTTG TTTTCGATAC TAGTTATCGG 
900
TCGGTACCTT ATGGATTGCT GCTTGGTGTT TTTTTTGGGA TAGATAATAA 
950
TGGAAAGGCG ATGCTTTTGG GATGTGTTTT GCTGCAAGAT GAGAGTTGTC 
1000
GTTCTTTCAC ATGGGCTTTA CAGACTTTTG TTCGTTTCAT GAGGGGACGA 
1050
CATCCTCAGA CAATTTTGAC GGATATAGAT ACAGGACTTA AAGATGCTAT 
1100
TGGGAGGGAA ATGCCAAATA CTAACCATGT GGTATTTATG TCGCACATTG 
1150
TCTCCAAATT AGCTAGCTGG TTTTCTCAGA CACTTGGGTC GCACTATGAA 
1200
GAATTTAGAG CAGGGTTTGA TATGTTATGC CGGGCAGGGA ATGTGGATGA 
1250
ATTTGAACAG CAGTGGGATC TTCTTGTCAC TCGGTTTGGT CTTGTTCCAG 
1300
ATAGGCATGC GGCTTTGCTT TATTCGTGCC GAGCATCTTG GTTACCTTGT 
1350
TGCATCAGAG AACATTTTGT AGCTCAAACT ATGACTTCTG AGTTTAATCT 
1400
ATCTATAGAT TCTTTCTTGA AAAGAGTTGT TGATGGAGCG ACATGCATGC 
1450
AACTATTACT TGAAGAGAGT GCATTGCAGG TTAGTGCTGC TGCAAGTCTA 
1500
GCCAAGCAAA TCCTGCCACG ATTCACATAT CCGAGTTTGA AAACCTGTAT 
1550
GCCTATGGAA GATCATGCAA GGGGGATTCT GACGCCTTAT GCCTTTAGCG 
1600
TATTGCAAAA CGAAATGGTT TTGTCTGTGC AGTATGCTGT GGCTGAGATG 
1650
GCCAATGGTC CATTCATCGT ACATCACTAT AAGAAAATGG AAGGGGAATG 
1700
TTGTGTGATC TGGAACCCAG AAAACGAGGA GATCCAATGT TCGTGCAAGG 
1750
AATTTGAGCA TTCCGGAATC TTGTGCAGGC ACACTCTTCG GGTACTGACC 
1800
GTGAAGAACT GCTTCCATAT ACCTGAACAG TATTTTCTAT TACGATGGAG 
1850
ACAAGAAAGT CCTCATGTAG CTACAGAGAA TCAGAATGGA CAGGGCATTG 
1900
GCGATGACTC TGCTCAAACA TTTCATTCGC TCACAGAAAC TCTCCTCACA 
1950
GAGTCTATGA TCTCAAAGGA TCGACTTGAT TACGCTAACC AAGAACTTTC 
2000
TTTACTTATC GATCGTGTGA GAAATACAGC ACCAGCTAAT TGCTTGTATC 
2050
AGCCATGA
2100

>AT5G28530.1 longest ORF length:685
MALKPLNNIW IRRQQCPCGD WKCYIRLEED ESTITKSEIE STPTPTSQYD 
50
TVFTPYVGQI FTTDDEAFEY YSTFARKSGF SIRKARSTES QNLGVYRRDF 
100
VCYRSGFNQP RKKANVEHPR ERKSVRCGCD GKLYLTKEVV DGVSHWYVSQ 
150
FSNVHNHELL EDDQVRLLPA YRKIQQSDQE RILLLSKAGF PVNRIVKLLE 
200
LEKGVVSGQL PFIEKDVRNF VRACKKSVQE NDAFMTEKRE SDTLELLECC 
250
KGLAERDMDF VYDCTSDENQ KVENIAWAYG DSVRGYSLFG DVVVFDTSYR 
300
SVPYGLLLGV FFGIDNNGKA MLLGCVLLQD ESCRSFTWAL QTFVRFMRGR 
350
HPQTILTDID TGLKDAIGRE MPNTNHVVFM SHIVSKLASW FSQTLGSHYE 
400
EFRAGFDMLC RAGNVDEFEQ QWDLLVTRFG LVPDRHAALL YSCRASWLPC 
450
CIREHFVAQT MTSEFNLSID SFLKRVVDGA TCMQLLLEES ALQVSAAASL 
500
AKQILPRFTY PSLKTCMPME DHARGILTPY AFSVLQNEMV LSVQYAVAEM 
550
ANGPFIVHHY KKMEGECCVI WNPENEEIQC SCKEFEHSGI LCRHTLRVLT 
600
VKNCFHIPEQ YFLLRWRQES PHVATENQNG QGIGDDSAQT FHSLTETLLT 
650
ESMISKDRLD YANQELSLLI DRVRNTAPAN CLYQP
700