fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G29000 PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)

>AT5G29000.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 796
KpnI GGTAC|C 932
PstI CTGCA|G 904
PvuII CAG|CTG 89, 358
SacI GAGCT|C 981
StyI C|C[AT][AT]GG 466
XhoI C|TCGAG 886


Click here to view TAIR data

>AT5G29000.1 length:1113
ATGAATAACC CTGTACCGTG TCAGTCGGTC TCTGGTGGCA ATTCTGGTGG 
50
TTATTTGTTT CCTTCTTCCT CTGGATACTG CAATGTTTCA GCTGTCTTGC 
100
CTCATGGAAG GAATTTGCAA AACCAGCCAC CTGTTTCCAC CGTGCCTAGA 
150
GACAGATTGG CTATGCAGGA TTGTCCTTTG ATAGCTCAAT CCTCGTTGAT 
200
TAATCATCAC CCTCAAGAGT TCATAGATCC ACTTCATGAG TTCTTTGATT 
250
TCTCTGATCA TGTTCCTGTT CAGAATCTAC AAGCAGAGAG TAGTGGAGTA 
300
AGGGTGGACT CATCCGTGGA ACTTCATAAG AAAAGTGAAT GGCAAGATTG 
350
GGCAGATCAG CTGATTTCTG TTGACGATGG TTCTGAGCCA AATTGGTCTG 
400
AACTTCTTGG AGATTCAAGT TCCCACAATC CAAATTCAGA GATACCTACA 
450
CCATTTTTGG ATGTACCAAG GCTAGATATA ACAGCTAACC AGCAGCAACA 
500
GATGGTTTCA TCAGAGGACC AGCTCAGCGG CAGAAACTCA TCATCTAGTG 
550
TAGCAACATC TAAACAACGT ATGCGTTGGA CACCAGAACT TCACGAGGCA 
600
TTCGTTGAAG CTGTTAATCA GCTTGGTGGT AGTGAACGAG CCACCCCTAA 
650
GGCTGTTTTG AAGCTCTTGA ATAACCCTGG CTTGACCATT TATCATGTAA 
700
AAAGCCATTT GCAGAAATAT AGAACGGCAA GGTATAAACC GGAGACTTCG 
750
GAAGTTACAG GAGAACCTCA AGAGAAGAAG ATGACATCTA TTGAAGATAT 
800
CAAATCTCTT GACATGAAAA CGAGCGTTGA GATCACACAA GCTCTACGGT 
850
TACAAATGGA AGTGCAGAAA CGTCTCCACG AGCAGCTCGA GATCCAACGG 
900
TCACTGCAGT TACAGATTGA AAAACAGGGC CGGTACCTAC AGATGATGTT 
950
CGAGAAACAA CAAAAGATAC AAGACAACAA GAGCTCTTCT TCAGAAGCAT 
1000
CACCAAAGCA ATGCAATGGT TCATTTGCAG AAGTTGAAGT TGGTCTTGAG 
1050
ACACTAACAG GGGACCAAAA TGAATCTGCT TCAGCATCAA GGAAACGTGT 
1100
CAGAGAAGAT TAA
1150

>AT5G29000.1 longest ORF length:370
MNNPVPCQSV SGGNSGGYLF PSSSGYCNVS AVLPHGRNLQ NQPPVSTVPR 
50
DRLAMQDCPL IAQSSLINHH PQEFIDPLHE FFDFSDHVPV QNLQAESSGV 
100
RVDSSVELHK KSEWQDWADQ LISVDDGSEP NWSELLGDSS SHNPNSEIPT 
150
PFLDVPRLDI TANQQQQMVS SEDQLSGRNS SSSVATSKQR MRWTPELHEA 
200
FVEAVNQLGG SERATPKAVL KLLNNPGLTI YHVKSHLQKY RTARYKPETS 
250
EVTGEPQEKK MTSIEDIKSL DMKTSVEITQ ALRLQMEVQK RLHEQLEIQR 
300
SLQLQIEKQG RYLQMMFEKQ QKIQDNKSSS SEASPKQCNG SFAEVEVGLE 
350
TLTGDQNESA SASRKRVRED 
400