fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G29000 PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)

>AT5G29000.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, SalI, SmaI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 925
KpnI GGTAC|C 1061
PstI CTGCA|G 1033
PvuII CAG|CTG 218, 487
SacI GAGCT|C 1110
SpeI A|CTAGT 64
StyI C|C[AT][AT]GG 595
XhoI C|TCGAG 1015


Click here to view TAIR data

>AT5G29000.2 length:1242
ATGACTCTGG CTAATGATTT CGGATATTCG ACCGCTATGT CTTCATCTTA 
50
TTCAGCTCTT CATACTAGTG TAGAAGACAG ATACCACAAG TTGCCTAACT 
100
CTTTTTGGGT TTCATCAGGT CAGGAACTGA TGAATAACCC TGTACCGTGT 
150
CAGTCGGTCT CTGGTGGCAA TTCTGGTGGT TATTTGTTTC CTTCTTCCTC 
200
TGGATACTGC AATGTTTCAG CTGTCTTGCC TCATGGAAGG AATTTGCAAA 
250
ACCAGCCACC TGTTTCCACC GTGCCTAGAG ACAGATTGGC TATGCAGGAT 
300
TGTCCTTTGA TAGCTCAATC CTCGTTGATT AATCATCACC CTCAAGAGTT 
350
CATAGATCCA CTTCATGAGT TCTTTGATTT CTCTGATCAT GTTCCTGTTC 
400
AGAATCTACA AGCAGAGAGT AGTGGAGTAA GGGTGGACTC ATCCGTGGAA 
450
CTTCATAAGA AAAGTGAATG GCAAGATTGG GCAGATCAGC TGATTTCTGT 
500
TGACGATGGT TCTGAGCCAA ATTGGTCTGA ACTTCTTGGA GATTCAAGTT 
550
CCCACAATCC AAATTCAGAG ATACCTACAC CATTTTTGGA TGTACCAAGG 
600
CTAGATATAA CAGCTAACCA GCAGCAACAG ATGGTTTCAT CAGAGGACCA 
650
GCTCAGCGGC AGAAACTCAT CATCTAGTGT AGCAACATCT AAACAACGTA 
700
TGCGTTGGAC ACCAGAACTT CACGAGGCAT TCGTTGAAGC TGTTAATCAG 
750
CTTGGTGGTA GTGAACGAGC CACCCCTAAG GCTGTTTTGA AGCTCTTGAA 
800
TAACCCTGGC TTGACCATTT ATCATGTAAA AAGCCATTTG CAGAAATATA 
850
GAACGGCAAG GTATAAACCG GAGACTTCGG AAGTTACAGG AGAACCTCAA 
900
GAGAAGAAGA TGACATCTAT TGAAGATATC AAATCTCTTG ACATGAAAAC 
950
GAGCGTTGAG ATCACACAAG CTCTACGGTT ACAAATGGAA GTGCAGAAAC 
1000
GTCTCCACGA GCAGCTCGAG ATCCAACGGT CACTGCAGTT ACAGATTGAA 
1050
AAACAGGGCC GGTACCTACA GATGATGTTC GAGAAACAAC AAAAGATACA 
1100
AGACAACAAG AGCTCTTCTT CAGAAGCATC ACCAAAGCAA TGCAATGGTT 
1150
CATTTGCAGA AGTTGAAGTT GGTCTTGAGA CACTAACAGG GGACCAAAAT 
1200
GAATCTGCTT CAGCATCAAG GAAACGTGTC AGAGAAGATT AA
1250

>AT5G29000.2 longest ORF length:413
MTLANDFGYS TAMSSSYSAL HTSVEDRYHK LPNSFWVSSG QELMNNPVPC 
50
QSVSGGNSGG YLFPSSSGYC NVSAVLPHGR NLQNQPPVST VPRDRLAMQD 
100
CPLIAQSSLI NHHPQEFIDP LHEFFDFSDH VPVQNLQAES SGVRVDSSVE 
150
LHKKSEWQDW ADQLISVDDG SEPNWSELLG DSSSHNPNSE IPTPFLDVPR 
200
LDITANQQQQ MVSSEDQLSG RNSSSSVATS KQRMRWTPEL HEAFVEAVNQ 
250
LGGSERATPK AVLKLLNNPG LTIYHVKSHL QKYRTARYKP ETSEVTGEPQ 
300
EKKMTSIEDI KSLDMKTSVE ITQALRLQME VQKRLHEQLE IQRSLQLQIE 
350
KQGRYLQMMF EKQQKIQDNK SSSSEASPKQ CNGSFAEVEV GLETLTGDQN 
400
ESASASRKRV RED
450