fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G35550 ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1)

>AT5G35550.1 CDS map

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Uncut enzymes: ApaI, AscI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 578
BglII A|GATCT 555
EcoRI G|AATTC 562
SpeI A|CTAGT 19, 496


Click here to view TAIR data

>AT5G35550.1 length:777
ATGGGAAAGA GAGCAACTAC TAGTGTGAGG AGAGAAGAGT TAAACAGAGG 
50
AGCTTGGACT GATCATGAAG ACAAGATCCT TAGAGATTAC ATCACCACTC 
100
ACGGCGAAGG CAAATGGAGC ACTCTCCCTA ACCAAGCTGG TCTCAAGAGG 
150
TGTGGCAAAA GCTGTAGACT TCGGTGGAAG AACTACCTAA GACCGGGGAT 
200
AAAGCGCGGT AACATCTCAT CTGATGAAGA AGAACTCATA ATCCGTCTCC 
250
ATAATCTTCT TGGAAACAGA TGGTCGTTGA TAGCTGGGAG GCTTCCAGGC 
300
CGAACAGACA ATGAAATAAA GAATCATTGG AACTCAAACC TCCGCAAAAG 
350
ACTTCCCAAA ACTCAAACCA AGCAACCAAA ACGTATAAAA CATTCGACGA 
400
ACAACGAGAA TAATGTATGT GTTATACGTA CAAAGGCGAT TAGGTGCTCA 
450
AAGACTCTTC TCTTCTCGGA TCTCTCTCTT CAGAAGAAGA GTAGTACTAG 
500
TCCACTACCT CTGAAAGAAC AAGAGATGGA TCAAGGTGGA TCTTCGTTGA 
550
TGGGAGATCT CGAATTCGAT TTCGATAGGA TCCATTCGGA GTTTCACTTC 
600
CCGGATTTGA TGGATTTTGA TGGTTTGGAC TGTGGAAACG TTACATCTCT 
650
TGTTTCATCT AACGAGATTT TGGGAGAGTT GGTTCCTGCT CAAGGTAATC 
700
TCGATCTCAA TAGACCTTTC ACTTCTTGTC ATCATCGTGG CGACGATGAA 
750
GATTGGCTCC GAGACTTCAC TTGTTGA
800

>AT5G35550.1 longest ORF length:258
MGKRATTSVR REELNRGAWT DHEDKILRDY ITTHGEGKWS TLPNQAGLKR 
50
CGKSCRLRWK NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG 
100
RTDNEIKNHW NSNLRKRLPK TQTKQPKRIK HSTNNENNVC VIRTKAIRCS 
150
KTLLFSDLSL QKKSSTSPLP LKEQEMDQGG SSLMGDLEFD FDRIHSEFHF 
200
PDLMDFDGLD CGNVTSLVSS NEILGELVPA QGNLDLNRPF TSCHHRGDDE 
250
DWLRDFTC
300