fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G38140 NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1)

>AT5G38140.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 373
XbaI T|CTAGA 306


Click here to view TAIR data

>AT5G38140.1 length:588
ATGAGGAGGC CAAAGTCATC TCACGTCAGG ATGGAACCTG TTGCGCCTCG 
50
TTCACATAAC ACGATGCCAA TGCTTGATCA ATTTCGATCT AATCATCCTG 
100
AAACAAGCAA GATCGAGGGG GTCTCTTCGT TGGACACAGC TCTGAAGGTG 
150
TTTTGGAATA ATCAAAGGGA GCAGCTAGGA AACTTTGCAG GCCAAACTCA 
200
TTTGCCGCTA TCTAGGGTCA GAAAGATTTT GAAATCTGAT CCTGAAGTCA 
250
AGAAGATAAG CTGTGATGTT CCTGCTTTGT TTTCGAAAGC CTGTGAATAC 
300
TTCATTCTAG AGGTAACATT ACGAGCTTGG ATGCATACTC AATCATGCAC 
350
TCGTGAGACC ATCCGGCGTT GTGATATCTT CCAGGCCGTA AAGAACTCAG 
400
GAACTTATGA TTTCCTGATT GATCGTGTCC CTTTTGGACC GCACTGTGTC 
450
ACCCATCAGG GTGTGCAACC TCCTGCTGAA ATGATTTTGC CGGATATGAA 
500
TGTTCCAATC GATATGGACC AGATTGAGGA GGAGAATATG ATGGAAGAGC 
550
GCTCTGTCGG GTTTGACCTC AACTGTGATC TCCAGTGA
600

>AT5G38140.1 longest ORF length:195
MRRPKSSHVR MEPVAPRSHN TMPMLDQFRS NHPETSKIEG VSSLDTALKV 
50
FWNNQREQLG NFAGQTHLPL SRVRKILKSD PEVKKISCDV PALFSKACEY 
100
FILEVTLRAW MHTQSCTRET IRRCDIFQAV KNSGTYDFLI DRVPFGPHCV 
150
THQGVQPPAE MILPDMNVPI DMDQIEEENM MEERSVGFDL NCDLQ
200