fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G38490 Domain of unknown function (DUF313) (.1)

>AT5G38490.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
StyI C|C[AT][AT]GG 634


Click here to view TAIR data

>AT5G38490.1 length:1095
ATGAGTAGTA TTATGTATCA CGATAATCAT CTCACGGATT CGGGGAAGAA 
50
TATGTCGTCG GGTTTAAGTT TACTGGCGTA TGTGACGGTT ATGGTTGCGG 
100
AGGAAGAAGA ACAACGTAGT CGTCTTCTTG CAGAGAAACG AGAAGAATCC 
150
AAGTGCAAGA TGAGTTTCTT CTATCTTTTC CCGAGGAAAA TCAAATCGTC 
200
TTTGGCGAAG AGAAGATACA CACAACAAAA CCCTAATGGG GCTTCTACTT 
250
GTTCGTCATC GCTTCCCGAT CTTAACCTAA TCCCTACTGA TTTTGAGACA 
300
GACAACCTAC AAAACCCTTG TTTTGATGAA CCTATGGTGT GTGATGAAGA 
350
ACAACGTTTA AAGAAAGGTA AATCCAAGAT TGTCTACGAT GAAGATTATG 
400
ATGACGAGAG TGAAAAGAAA CTCTTTGATA ATCTTAATGG AGCTTCTACT 
450
TCTTCTTCAT CGCTCCTGAA CCTTCCTTGT CTTGAACCTT CGACAGAGAC 
500
AAAAGACGTA CCAAACCCTA ATTACCAATC TTCGTCTCCG TCTTCATGCC 
550
TAACAGGGAA GACAAACCGC AAGAGGCGTG CCGTGGAGCA GAGGAAGAGT 
600
GGTAAAGTCA AGAAAGTTAA GGTTTCTCCT TTGCCAAGGT TGTGTACAGA 
650
GATGCCTGAG TGGATTTTCC AAGTGATGAG ATACATGAAC GCTGATGCTG 
700
AAACCCCGAG GCTGATATTT GAGAGGACTC TGTTTAAGAG TGATGTCAAC 
750
TCAAACCTTA GTCGTCTCTT AATGCCTTTC CAGAAGCTAA TCAGAAACGA 
800
TTTCCTGACT CCTGCGGAGT GTAGAGCTAT GCAGAAAGAC GAAGACAATG 
850
ATGAAGAAGA CGACGAGAAT ATTGGTGTGG GAACGGTTCT TGTGAACCAA 
900
AGATTTCAAA AGTGGGGTTT GCGTTTCAAG ATATGGGCGA TGGAGAAGGA 
950
CTCTGGACAT GGAACATTGA ATTACACTTT GAATTGGGGT TGGAATGATG 
1000
TCGTCAAAAG TAGCAGCTTA AAAGTCGGCG ACAAGATCAG CCTTTGGACT 
1050
TTCAGGTGCC GTGGAGTCCT CTGCTTTGCA CTTGACACAG AGTAG
1100

>AT5G38490.1 longest ORF length:364
MSSIMYHDNH LTDSGKNMSS GLSLLAYVTV MVAEEEEQRS RLLAEKREES 
50
KCKMSFFYLF PRKIKSSLAK RRYTQQNPNG ASTCSSSLPD LNLIPTDFET 
100
DNLQNPCFDE PMVCDEEQRL KKGKSKIVYD EDYDDESEKK LFDNLNGAST 
150
SSSSLLNLPC LEPSTETKDV PNPNYQSSSP SSCLTGKTNR KRRAVEQRKS 
200
GKVKKVKVSP LPRLCTEMPE WIFQVMRYMN ADAETPRLIF ERTLFKSDVN 
250
SNLSRLLMPF QKLIRNDFLT PAECRAMQKD EDNDEEDDEN IGVGTVLVNQ 
300
RFQKWGLRFK IWAMEKDSGH GTLNYTLNWG WNDVVKSSSL KVGDKISLWT 
350
FRCRGVLCFA LDTE
400