Locus |
Common name |
Short description |
AT5G38800 |
ATBZIP43 |
basic leucine-zipper 43 (.1) |
>AT5G38800.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
231 |
HindIII
| A|AGCTT |
343 |
NcoI
| C|CATGG |
30 |
PvuII
| CAG|CTG |
331 |
StyI
| C|C[AT][AT]GG |
30 |
Click here to view TAIR data
>AT5G38800.1 length:498
ATGCAACCAT CCACCAACAT TTTTAGCCTC CATGGTTGTC CACCTTCGTA | 50 |
CCTTTCCCAT ATTCCTACAT CCTCACCATT TTGCGGACAA AACCCTAATC | 100 |
CATTCTTCAG CTTCGAAACT GGCGTGAACA CTTCACAGTT CATGAGTTTG | 150 |
ATCAGCAGCA ACAACTCGAC CTCAGATGAA GCAGAAGAGA ATCATAAGGA | 200 |
GATAATAAAT GAGAGGAAGC AAAAGAGGAA GATATCTAAC AGAGAATCGG | 250 |
CAAGAAGATC GCGTATGAGG AAGCAGAGAC AAGTGGATGA GCTTTGGTCA | 300 |
CAGGTGATGT GGCTTAGGGA TGAGAATCAT CAGCTGCTTC GTAAGCTTAA | 350 |
CTGCGTTTTA GAGTCTCAAG AGAAGGTTAT TGAAGAGAAT GTTCAGCTCA | 400 |
AAGAGGAAAC CACTGAGCTT AAGCAAATGA TTAGTGATAT GCAGCTTCAG | 450 |
AATCAGAGTC CTTTCTCTTG CATCAGAGAC GACGACGACG TTGTATAG | 500 |
>AT5G38800.1 longest ORF length:165
MQPSTNIFSL HGCPPSYLSH IPTSSPFCGQ NPNPFFSFET GVNTSQFMSL | 50 |
ISSNNSTSDE AEENHKEIIN ERKQKRKISN RESARRSRMR KQRQVDELWS | 100 |
QVMWLRDENH QLLRKLNCVL ESQEKVIEEN VQLKEETTEL KQMISDMQLQ | 150 |
NQSPFSCIRD DDDVV | 200 |
|