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| Locus | Common name | Short description |
| AT5G38840 | SMAD/FHA domain-containing protein (.1) |
>AT5G38840.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, NheI, NotI, PacI, SacI, SmaI, SpeI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 18 |
| EcoRV | GAT|ATC | 49 |
| HindIII | A|AGCTT | 686 |
| HpaI | GTT|AAC | 508 |
| KpnI | GGTAC|C | 2145 |
| NcoI | C|CATGG | 719 |
| NdeI | CA|TATG | 877 |
| PstI | CTGCA|G | 2153 |
| PvuII | CAG|CTG | 1658 |
| SalI | G|TCGAC | 1801 |
| StyI | C|C[AT][AT]GG | 194, 600, 719 |
Click here to view TAIR data
>AT5G38840.1 length:2208
ATGACTACAT CGGCGATGGA TCCTCCTCCA CCGCGAAACC CTAGCCATGA | 50 |
TATCGAGCCT CCTGAACCAA ACAGTACATC AATTTCCCAA AGCGATGAAA | 100 |
CCTCAACGAT GAATCCTCCA CCTCCCAGAA ACCCTAACCC ACCTGATCTG | 150 |
AAGACAACGG AAGTAGTTGT AGAGCCCGAG CCAATAGAGG AATCCAAGGA | 200 |
CGATTCCGTC ACTGTAGACG CGGATAAACC AGTTCGTCCC CGAACCGTGA | 250 |
AGCAGAATCC TGTCCCCTAC ACTATTCCAG AGTGGAGTGG CCCTCCGTGT | 300 |
CACCAATTTC AGCTTGAAGT TCTCAAAGAA GGCGCCATTG TTGAGAAATT | 350 |
AGACGTCTAT AAGAAAGGAG CTTACTTGTT TGGACGTGAT GGTATCTGTG | 400 |
ATTTTGCTCT TGAGCACCCT TCGATTTCTC GGTTTCATGC AGTTATTCAG | 450 |
TACAAGAGGA GTGGAGCTGC GTATATATTT GATCTTGGAA GCACGCATGG | 500 |
AACAACTGTT AACAAGAATA AGGTGGATAA AAAGGTTTTT GTGGATTTGA | 550 |
ATGTCGGTGA TGTTATTCGC TTTGGCGGTT CGACTAGATT ATACATTTTC | 600 |
CAAGGACCCT CGGACTTAAT GCCACCAGAG AAAGACTTAC AATTAATTAG | 650 |
AGAAGCAAAG ATGAGAATGG AAATGTCAGA ACGAGAAGCT TCACTGCGAC | 700 |
GAGCAAGGCA GCAAGCATCC ATGGCTGATG GTGTTTCATG GGGCATGGGG | 750 |
GAAGATGCTA TTGAAGAAGA AGAGGATGAT GTTGAGGAAA TTACTTGGCA | 800 |
AACATATAGT GGAGAACTCA CTCCAAAGCA AGAAAAAACT AAGGAGAAAG | 850 |
TACTGAAACG GTTGGAGAAG ATCGGCCATA TGAAGAAGGA AGTAGCAGCT | 900 |
ATTCGAGCCA AAGACATTTC TCAGGGTGGA TTGACACAAG GACAACAAAC | 950 |
GCAGATCGCT AGGAATGAGC AGAGAACGGC TGAGCTTCTG GAAGAACTTG | 1000 |
AGAACTTGGA AGAGACACTG AATGACAGCA TCCGGGAAAG TTTGGGTGCC | 1050 |
AAAACAGGGA GAAAACCCAC CCACGGAAAG AAGAAAGGAA TTGTAGAAGA | 1100 |
TGAGGAAGAC TTGTCGAGTG ATGAAGATGA CTTCTATGAC CGGACCCAGA | 1150 |
AGAAACCATC AACAAAGAAA GGCAGCGAAA ACCAAACTGT AGAAACTGTT | 1200 |
GATTCACTTG TAGATAAGAG AGACAATGTC TTGAAAGAAA TAGAAGCAAA | 1250 |
GAATGAACAG CTTTTAACAG AGAAGAGTAA GATGGAGACA GAGAATGTCA | 1300 |
CAGAGGTTAC ATCGGGAGAC TCCCTTGATG CCCTTGATGC ATACATGACC | 1350 |
GGGCTTTCTA CAACACTTGT GCAAGATAAA ACCGCCCAGA TCCAGCAAGA | 1400 |
GTTGTCTACT CTACAGTCAG AATTAAGTAG GATCTTATAC CTTCTAAAGA | 1450 |
TTGCTGACCC AACCGGAGAA GAGGTTAAGA AAAGGGAGTT GAAGTCACAA | 1500 |
GAATTAAAAA TAAAGAAATC TGAAACACCT TCCGTAGAAA AGAAGATCAA | 1550 |
TATACCTTTA AAACAAGCTG ATCCTAATGA GCATAAGGAG AAAGAAGTGG | 1600 |
CCAAAGATTT AGTGGACTCA GAAAATAAGC CTGAAGTAGA AAATAAAGCA | 1650 |
AGTGAAACAG CTGAAGAAAA GAAGACCACT GTGTATGTTC CATCAAAACC | 1700 |
CCAATGGCTC GGTTCCGCTG CAAATAAAGC CATAATTGAA GAAAAAAACC | 1750 |
CTGAGATAGT AGCTGCTACT ACTGATAGCA CAGAGGATGC TGATGGGTTT | 1800 |
GTCGACTATA AAAATAGGAA GAATATTGCT CTAACAGCCA CCGCTGGAGT | 1850 |
TGAAGTTGTA ACAGGGTTGA TAATAAGAAA ACGTAAGCAA GAAGACAAGA | 1900 |
GCGAAGAAGA TGATGATTCA AAGGAAAAGC AAGCAGAGGT CATGGCACAG | 1950 |
GATGCAGTTG CTCTCTTATT GAAACATTCT GTAGGCCATC ATGTAAACGA | 2000 |
AGAAGACAAA GAACTCAGTA AACAGGAAGA AAATAATCAA GGAAGTGGCC | 2050 |
AAAGTAAAAC GAAGAAGAAG AAGAAGACGG CTAAAAAAGT AGTTGGTCCT | 2100 |
GATAAACCAG AATATCTGGA TGAAACCATA GATTATGATT CTTGGGTACC | 2150 |
TCCTGCAGGA CAATCTGGTG ATGGGCGAAC ATCTCTAAAT GACCGTCTGG | 2200 |
GATATTGA | 2250 |
>AT5G38840.1 longest ORF length:735
MTTSAMDPPP PRNPSHDIEP PEPNSTSISQ SDETSTMNPP PPRNPNPPDL | 50 |
KTTEVVVEPE PIEESKDDSV TVDADKPVRP RTVKQNPVPY TIPEWSGPPC | 100 |
HQFQLEVLKE GAIVEKLDVY KKGAYLFGRD GICDFALEHP SISRFHAVIQ | 150 |
YKRSGAAYIF DLGSTHGTTV NKNKVDKKVF VDLNVGDVIR FGGSTRLYIF | 200 |
QGPSDLMPPE KDLQLIREAK MRMEMSEREA SLRRARQQAS MADGVSWGMG | 250 |
EDAIEEEEDD VEEITWQTYS GELTPKQEKT KEKVLKRLEK IGHMKKEVAA | 300 |
IRAKDISQGG LTQGQQTQIA RNEQRTAELL EELENLEETL NDSIRESLGA | 350 |
KTGRKPTHGK KKGIVEDEED LSSDEDDFYD RTQKKPSTKK GSENQTVETV | 400 |
DSLVDKRDNV LKEIEAKNEQ LLTEKSKMET ENVTEVTSGD SLDALDAYMT | 450 |
GLSTTLVQDK TAQIQQELST LQSELSRILY LLKIADPTGE EVKKRELKSQ | 500 |
ELKIKKSETP SVEKKINIPL KQADPNEHKE KEVAKDLVDS ENKPEVENKA | 550 |
SETAEEKKTT VYVPSKPQWL GSAANKAIIE EKNPEIVAAT TDSTEDADGF | 600 |
VDYKNRKNIA LTATAGVEVV TGLIIRKRKQ EDKSEEDDDS KEKQAEVMAQ | 650 |
DAVALLLKHS VGHHVNEEDK ELSKQEENNQ GSGQSKTKKK KKTAKKVVGP | 700 |
DKPEYLDETI DYDSWVPPAG QSGDGRTSLN DRLGY | 750 |