fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G39660 CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2)

>AT5G39660.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
HpaI GTT|AAC 472
PvuII CAG|CTG 518
SacI GAGCT|C 1365
SmaI CCC|GGG 954


Click here to view TAIR data

>AT5G39660.2 length:1374
ATGGCTGATC CGGCGATTAA GCTCTTTGGA AAGACGATTC CTTTACCTGA 
50
GCTTGGTGTT GTTGATTCTT CTTCTAGCTA TACCGGATTT TTAACCGAAA 
100
CTCAGATTCC TGTTCGGTTA TCAGATTCGT GTACCGGCGA TGATGATGAT 
150
GAAGAGATGG GTGATTCCGG TTTAGGACGA GAAGAAGGTG ATGATGTTGG 
200
TGATGGTGGA GGAGAGAGCG AGACTGATAA AAAGGAAGAA AAAGATAGTG 
250
AGTGTCAGGA AGAGTCATTG AGGAATGAAT CTAATGATGT TACTACTACT 
300
ACATCGGGTA TAACTGAAAA AACGGAAACA ACAAAAGCTG CAAAGACGAA 
350
TGAAGAGTCA GGTGGTACTG CTTGCTCTCA AGAGGGGAAG TTAAAGAAAC 
400
CTGATAAGAT TCTACCGTGT CCGCGATGTA ACAGCATGGA AACCAAGTTC 
450
TGTTACTACA ACAACTATAA TGTTAACCAA CCTCGCCATT TCTGCAAGAA 
500
ATGTCAGAGA TATTGGACAG CTGGTGGAAC GATGAGGAAT GTTCCGGTTG 
550
GTGCTGGGAG ACGTAAGAAT AAGAGTCCAG CTTCTCATTA TAACCGTCAT 
600
GTAAGTATAA CATCTGCGGA AGCTATGCAG AAGGTGGCGA GAACTGATCT 
650
TCAACATCCT AATGGTGCAA ATCTTCTCAC TTTTGGCTCT GATTCTGTGC 
700
TTTGTGAATC TATGGCTTCT GGATTGAATC TTGTTGAGAA GTCATTGTTG 
750
AAGACACAAA CTGTATTGCA AGAACCCAAT GAAGGCTTGA AGATTACGGT 
800
TCCGTTAAAC CAGACAAACG AAGAAGCTGG AACAGTCAGC CCGTTACCAA 
850
AAGTTCCATG CTTTCCAGGA CCACCACCAA CTTGGCCTTA CGCTTGGAAC 
900
GGAGTTTCGT GGACGATTTT ACCGTTTTAC CCTCCACCGG CTTACTGGAG 
950
CTGCCCGGGG GTTTCACCGG GGGCATGGAA CAGCTTCACA TGGATGCCAC 
1000
AACCCAATTC ACCATCTGGT TCCAATCCAA ATTCTCCTAC ACTAGGTAAA 
1050
CATTCACGTG ACGAGAACGC TGCTGAACCA GGAACCGCTT TTGATGAAAC 
1100
CGAGTCACTT GGTAGGGAGA AAAGCAAACC CGAGAGATGC TTGTGGGTTC 
1150
CCAAGACGCT GAGGATTGAT GATCCAGAGG AAGCTGCTAA AAGTTCCATC 
1200
TGGGAAACAT TAGGGATCAA AAAAGACGAA AATGCGGATA CTTTCGGAGC 
1250
TTTCAGATCA TCAACCAAAG AAAAAAGCAG TCTTTCTGAA GGAAGACTTC 
1300
CGGGAAGAAG ACCGGAGTTG CAAGCGAATC CTGCTGCTCT TTCTAGGTCA 
1350
GCAAACTTCC ATGAGAGCTC ATAG
1400

>AT5G39660.2 longest ORF length:457
MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD 
50
EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT 
100
TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF 
150
CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH 
200
VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL 
250
KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN 
300
GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK 
350
HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI 
400
WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS 
450
ANFHESS
500