fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G39690 ANAC093 NAC domain containing protein 93 (.1)

>AT5G39690.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NotI, PacI, SacI, SalI, SmaI, SpeI, StyI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 115
HindIII A|AGCTT 89
NheI G|CTAGC 543
PstI CTGCA|G 688
PvuII CAG|CTG 592, 622, 685
XbaI T|CTAGA 552


Click here to view TAIR data

>AT5G39690.1 length:885
ATGGCTAAGA AAGAGAAGAT CGAGCAAGTG ATTTCAATGG GTGGAATAAT 
50
GTGGGAAGGT CTCAATTCGA GTTTAATCAA AGTCGATGAA GCTTTGCTTA 
100
AGCAGCAGAT CCGAGAATTC GAGAAGGGTA ACGATAAAGA ATGGTTTATT 
150
ATAACGGAGA GGAACAAAGT TGATCAAGGT TTAAGCCAAA CAAAGAGAGT 
200
TGGTAATGGT GCGAAAAGGC AGAAACGTGT TGACACTAAC GGAGGATATT 
250
GGCACGCAAC AGTGGCTGCC CAAAAGATCA ACGCTGGAGA TGGTGTCGTT 
300
GGCAACAAAA GGCCACTTGC ATACTACGAT AGGAAACCAT CAGAAGACGT 
350
CAAAACTGAT TGGTTAATGC AAGAATACTC TCTTGATCAC AACAACGACA 
400
AGGTAAGATT ACACTTTGTG CAAGATTTAT CTTACTCCAC AAGCAACAAA 
450
GAAGTTGGAG AAGAGAAGAA GAAGCAGAAG AAAGGAGAAC CTGTGGAAGC 
500
ATCGGAAGGG CAGCAGCCTT GTAATGCCGA GTATCATCAA CCGCTAGCAC 
550
CTCTAGATTC TTGCCAACCG CAGCCTCATG ATTTGGCTGA GCAGCTGGAT 
600
TTGCATCAAC CAGAACAGTT GCAGCTGCAA CAGCCTCATG ATATTGTGTA 
650
TCAACCACAG TATTGTTTAC TTCCAGAACA ACATCAGCTG CAGCCTTTTC 
700
CTGATAACTT TTCTGAGTTG AACAGCTTTC AACAGCAACC AGTGATGATC 
750
CCAGACGATT TAGAAGATTT CTTGGCTGAA TTAATGGAGC CACATTCACT 
800
GGATGGAGAT GAAGAATCCA ACAATTATGG GTTTTTTGAA GGCTTATTTG 
850
ACACAGAAGG AATTAATGAT AAAACATTAC ACTAA
900

>AT5G39690.1 longest ORF length:294
MAKKEKIEQV ISMGGIMWEG LNSSLIKVDE ALLKQQIREF EKGNDKEWFI 
50
ITERNKVDQG LSQTKRVGNG AKRQKRVDTN GGYWHATVAA QKINAGDGVV 
100
GNKRPLAYYD RKPSEDVKTD WLMQEYSLDH NNDKVRLHFV QDLSYSTSNK 
150
EVGEEKKKQK KGEPVEASEG QQPCNAEYHQ PLAPLDSCQP QPHDLAEQLD 
200
LHQPEQLQLQ QPHDIVYQPQ YCLLPEQHQL QPFPDNFSEL NSFQQQPVMI 
250
PDDLEDFLAE LMEPHSLDGD EESNNYGFFE GLFDTEGIND KTLH
300