fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G39820 ANAC094 NAC domain containing protein 94 (.1)

>AT5G39820.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 738
NcoI C|CATGG 184
PvuII CAG|CTG 752
SalI G|TCGAC 163
StyI C|C[AT][AT]GG 184


Click here to view TAIR data

>AT5G39820.1 length:1005
ATGGTTCTAG TTATGGATGA TGAAGAGAGT AACAACGTTG AAAGATATGA 
50
CGACGTCGTA TTGCCAGGGT TTAGGTTCCA TCCCACTGAT GAAGAACTCG 
100
TAAGTTTCTA CTTGAAACGG AAGGTTTTAC ACAAATCTCT TCCCTTTGAT 
150
CTCATCAAGA AAGTCGACAT TTACAAATAC GATCCATGGG ACCTCCCAAC 
200
GATGGGGGAA AAAGAGTGGT ACTTTTATTG TCCTAGAGAC AGGAAATACC 
250
GCAACAGCAC AAGACCTAAC CGAGTAACTG GAGGTGGCTT CTGGAAAGCA 
300
ACCGGAACAG ACCGGCCTAT ATACTCATTG GACTCCACTC GATGCATCGG 
350
TTTGAAGAAA TCACTTGTGT TCTACCGTGG TCGAGCTGCT AAAGGAGTCA 
400
AAACCGATTG GATGATGCAT GAATTTCGTC TCCCTTCTCT CTCTGACTCT 
450
CATCACTCAT CATATCCCAA TTACAATAAC AAGAAGCAAC ACCTTAACAA 
500
TAACAACAAC AGCAAGGAGC TTCCTTCAAA CGATGCTTGG GCGATATGTA 
550
GAATATTTAA GAAGACAAAT GCAGTATCCT CACAAAGATC AATCCCACAA 
600
TCTTGGGTTT ATCCAACGAT TCCTGACAAC AATCAACAGT CACACAACAA 
650
CACCGCAACT CTCTTAGCTT CATCAGACGT TCTCAGCCAC ATATCAACAA 
700
GACAAAACTT TATTCCTTCT CCAGTCAACG AACCCGCAAG CTTCACAGAA 
750
TCAGCTGCTT CTTACTTCGC GTCTCAGATG CTCGGAGTCA CGTACAATAC 
800
AGCCAGAAAC AACGGAACAG GGGATGCTCT GTTTCTGAGA AACAATGGAA 
850
CAGGGGATGC TCTGGTTCTG AGCAACAATG AGAATAACTA CTTCAACAAC 
900
TTGACTGGAG GGTTGACTCA TGAGGTTCCG AATGTAAGAT CAATGGTGAT 
950
GGAGGAGACT ACGGGGAGTG AGATGTCGGC GACGTCGTAT TCCACTAACA 
1000
ATTAA
1050

>AT5G39820.1 longest ORF length:334
MVLVMDDEES NNVERYDDVV LPGFRFHPTD EELVSFYLKR KVLHKSLPFD 
50
LIKKVDIYKY DPWDLPTMGE KEWYFYCPRD RKYRNSTRPN RVTGGGFWKA 
100
TGTDRPIYSL DSTRCIGLKK SLVFYRGRAA KGVKTDWMMH EFRLPSLSDS 
150
HHSSYPNYNN KKQHLNNNNN SKELPSNDAW AICRIFKKTN AVSSQRSIPQ 
200
SWVYPTIPDN NQQSHNNTAT LLASSDVLSH ISTRQNFIPS PVNEPASFTE 
250
SAASYFASQM LGVTYNTARN NGTGDALFLR NNGTGDALVL SNNENNYFNN 
300
LTGGLTHEVP NVRSMVMEET TGSEMSATSY STNN
350