|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G40310 | Exonuclease family protein (.1) |
>AT5G40310.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI
| Name | Recognition sequence | Cut positions |
| EcoRV | GAT|ATC | 881 |
| PstI | CTGCA|G | 213 |
| XhoI | C|TCGAG | 371 |
Click here to view TAIR data
>AT5G40310.1 length:1047
ATGGATACAT GCAGGAACAA GTGTGGAGGG TGTTATAGGC AATTCAACAA | 50 |
GAAGGAGCAC TTGGTGGAAC ACATGAGGAT CTCTTATCAT TCGGTTCATG | 100 |
AACCTACTTG TGGTATTTGC AACAAACATT GCCGATCTTT TGACTCCCTC | 150 |
CGTGAACATC TCATTGGGCC ATTGCCGAAA CAAGAATGTA AGAACATTTT | 200 |
CAGCATTCGC GGCTGCAGAT TCTGTCTTAC GATCCTCGAA AGCCCCAACG | 250 |
CTCGTAGAAT CCATCAAGAG AGATGCCAGC TCTCAAACGT CACTTCTGGA | 300 |
TTAATGATTC GTATGGCGGC CTTAGGCCTA AGAAACAACT CAACAATTGA | 350 |
CTACACTTCT TCGAGGTCAC CTCGAGTGGT GGCACTCTCA TGCAAGATGG | 400 |
TTGGAGGAGG CAGTGACGGA TCGCTTGACC TATGCGCAAG AGTTTGCATT | 450 |
ACGGATGAGA GCGAAAATGT TGTGTTCCAC ACGTATGTGA AGCCAACGAT | 500 |
ACCCGTAACG AATTATAGGT ATGAGATGAC AGGGATTCGA CCTGAAAATC | 550 |
TAAGGGACGC AATGCGATTA AAGCACGCAC AGAGAAAGGT TCAAGAGTTT | 600 |
CTTTGTAATG GAGAACCAAT GTGGAAGATT CGTCCAAGAA ATGGGAAAGC | 650 |
AAGGATTCTC GTTGGACATG GACTTGATAA CCATCTTGAC TCTCTTCAAC | 700 |
TTGAATATTC TTCCTCTATG ATAAGAGATA CTGCGGAATA CCCTCCATTG | 750 |
ATGAAATCAA GCAAGCTAAG CAACTCTCTC AAGTACTTAA CCCAAGCCTA | 800 |
TCTCGGTTAT GATATTCATG TGGGAATACA AGATCCTTAC GAGGACTGTG | 850 |
TCGCGACAAT GAGGCTATAC ACGAGAATGC GATATCAGAA ACACAGGGCC | 900 |
GAGGCCTATC CGCTGGCCTC GGACACGCAG AACCACAATA ACTTTGCGGC | 950 |
GTGGAGGCAG AATGAACTAG AGAGGATGTC TCCAGAGGAG TTGCTCGACC | 1000 |
TTTCACGTTC AGACTATTAC TGCTGGTGCT TGGACTCGGT TGCTTGA | 1050 |
>AT5G40310.1 longest ORF length:348
MDTCRNKCGG CYRQFNKKEH LVEHMRISYH SVHEPTCGIC NKHCRSFDSL | 50 |
REHLIGPLPK QECKNIFSIR GCRFCLTILE SPNARRIHQE RCQLSNVTSG | 100 |
LMIRMAALGL RNNSTIDYTS SRSPRVVALS CKMVGGGSDG SLDLCARVCI | 150 |
TDESENVVFH TYVKPTIPVT NYRYEMTGIR PENLRDAMRL KHAQRKVQEF | 200 |
LCNGEPMWKI RPRNGKARIL VGHGLDNHLD SLQLEYSSSM IRDTAEYPPL | 250 |
MKSSKLSNSL KYLTQAYLGY DIHVGIQDPY EDCVATMRLY TRMRYQKHRA | 300 |
EAYPLASDTQ NHNNFAAWRQ NELERMSPEE LLDLSRSDYY CWCLDSVA | 350 |