fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G40360 ATMYB115 myb domain protein 115 (.1)

>AT5G40360.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 385
NcoI C|CATGG 1040
PvuII CAG|CTG 95
SalI G|TCGAC 767
StyI C|C[AT][AT]GG 564, 1040


Click here to view TAIR data

>AT5G40360.1 length:1080
ATGTATCACC AAAATCTGAT TTCATCGACC CCAAACCAAA ATTCTAATCC 
50
TCACGATTGG GATATTCAAA ATCCTTTATT TTCCATACAT CCTTCAGCTG 
100
AAATACCCTC AAAATATCCC TTTATGGGTA TCACTTCTTG CCCAAACACC 
150
AATGTTTTTG AGGAATTTCA ATATAAAATA ACCAACGATC AAAACTTTCC 
200
AACGACCTAT AACACCCCAT TCCCTGTAAT ATCTGAAGGT ATATCATACA 
250
ATATGCATGA TGTTCAAGAG AATACTATGT GTGGTTATAC TGCTCACAAT 
300
CAAGGGCTTA TCATTGGTTG TCACGAGCCA GTTCTTGTTC ATGCCGTGGT 
350
TGAGTCTCAG CAATTTAATG TCCCACAGTC AGAGGATATC AATTTAGTAT 
400
CTCAGAGTGA GAGGGTCACA GAAGATAAGG TAATGTTCAA AACCGATCAT 
450
AAGAAGAAAG ACATTATTGG CAAAGGGCAA TGGACTCCTA CTGAAGACGA 
500
GTTGTTGGTG AGAATGGTGA AAAGTAAAGG AACGAAAAAC TGGACATCAA 
550
TCGCAAAAAT GTTCCAAGGA CGAGTAGGAA AACAATGTCG AGAGAGGTGG 
600
CATAACCATC TTCGACCAAA CATCAAGAAA AATGATTGGA GTGAAGAAGA 
650
AGATCAAATA CTTATTGAAG TCCACAAGAT AGTTGGCAAC AAATGGACCG 
700
AAATTGCTAA AAGACTTCCT GGACGAAGTG AAAATATTGT TAAAAATCAT 
750
TGGAATGCTA CAAAACGTCG ACTACACTCC GTAAGGACTA AGAGAAGTGA 
800
TGCTTTTTCC CCTCGCAACA ATGCCCTTGA AAATTACATA AGGTCTATCA 
850
CAATCAACAA CAATGCCCTT ATGAACAGAG AAGTTGATTC TATAACTGCA 
900
AACTCGGAAA TTGATAGTAC CAGATGTGAG AATATTGTTG ACGAGGTGAT 
950
GAATCTGAAT CTGCACGCTA CAACGTCCGT TTATGTTCCG GAGCAAGCAG 
1000
TGTTGACATG GGGTTATGAT TTTACAAAAT GTTATGAACC CATGGATGAT 
1050
ACATGGATGC TCATGAATGG TTGGAATTAA 
1100

>AT5G40360.1 longest ORF length:359
MYHQNLISST PNQNSNPHDW DIQNPLFSIH PSAEIPSKYP FMGITSCPNT 
50
NVFEEFQYKI TNDQNFPTTY NTPFPVISEG ISYNMHDVQE NTMCGYTAHN 
100
QGLIIGCHEP VLVHAVVESQ QFNVPQSEDI NLVSQSERVT EDKVMFKTDH 
150
KKKDIIGKGQ WTPTEDELLV RMVKSKGTKN WTSIAKMFQG RVGKQCRERW 
200
HNHLRPNIKK NDWSEEEDQI LIEVHKIVGN KWTEIAKRLP GRSENIVKNH 
250
WNATKRRLHS VRTKRSDAFS PRNNALENYI RSITINNNAL MNREVDSITA 
300
NSEIDSTRCE NIVDEVMNLN LHATTSVYVP EQAVLTWGYD FTKCYEPMDD 
350
TWMLMNGWN
400