fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G40710 zinc finger (C2H2 type) family protein (.1)

>AT5G40710.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 763
EcoRI G|AATTC 12
PstI CTGCA|G 497
PvuII CAG|CTG 500
XhoI C|TCGAG 109


Click here to view TAIR data

>AT5G40710.1 length:819
ATGGGAAGAT CGAATTCTCA ATGCCCATCT CATTGGATTC TCCTCTGCTT 
50
CTTCATCTCT TCTCAGTTTT GGGGATTCTC ACTTCCCACT TCGATAATTC 
100
AACAAAATCT CGAGGGTTTT AAAGATCCTG AAGACGGTTT TCATGAGATT 
150
CATTGTTCAA GAGAACGTAG CAGAGTTGCT TGGAAAATCA TTCAAGAGTA 
200
TCTCATGCCG TATGTGGAAA AGGAGCGGTA TCAGTTACCG AGTACTTGTA 
250
GAGTTCATCG AGACAATGAC ATTTATAGAG AACAAGAAGA GCACAAATTG 
300
CGTTCAGATA TTAATGAGTG GCGTTGTGGA TTCTGCAAAA AGGCTTTTTA 
350
TGAAGAGAAG TATCTCGATA AGCATTTCGA TTCGCGCCAT TACAATTTAC 
400
TTAATGCGAG TCATGGTAAA TGTCTGTCGG ATCTTTGTGG AGCGTTGCAT 
450
TGTGATCTTG TTGTAGACAC AGCTCGGCTT AAGTCCAAGT GTAATCCTGC 
500
AGCTGCTGCA AAAAACCGGC ACTTATGTGA GAGTTTGGCT AATAGTTGTT 
550
TTCCGGTAAA TAAAGGTTCA TCAGCCAACC GTCTTCACGA TTTCTTCTTG 
600
CGTCAGTTCT GCGATGCACA TACATGTTCA GGAGGATCAA AGCCCTTATC 
650
TCAAAAACCA AAGAAGAGGA GTATAGTGTA CATTATTTTC TCCATCATCG 
700
TTTTGGTAGT GCTTCTTCTC TATTACAGCT TTGTCTATTT GTTCCGAAGA 
750
GGATTAAAGA GAAGATCTCA AGATTTGAAG CGTATTAGAC ACAATGGTCT 
800
GAAGAAGAAA CCCTTCTAA
850

>AT5G40710.1 longest ORF length:272
MGRSNSQCPS HWILLCFFIS SQFWGFSLPT SIIQQNLEGF KDPEDGFHEI 
50
HCSRERSRVA WKIIQEYLMP YVEKERYQLP STCRVHRDND IYREQEEHKL 
100
RSDINEWRCG FCKKAFYEEK YLDKHFDSRH YNLLNASHGK CLSDLCGALH 
150
CDLVVDTARL KSKCNPAAAA KNRHLCESLA NSCFPVNKGS SANRLHDFFL 
200
RQFCDAHTCS GGSKPLSQKP KKRSIVYIIF SIIVLVVLLL YYSFVYLFRR 
250
GLKRRSQDLK RIRHNGLKKK PF
300