|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G41020 | myb family transcription factor (.1) |
>AT5G41020.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| EcoRI | G|AATTC | 70 |
| EcoRV | GAT|ATC | 601, 1473 |
| HindIII | A|AGCTT | 1607 |
| StyI | C|C[AT][AT]GG | 353, 1072, 1399 |
Click here to view TAIR data
>AT5G41020.1 length:1767
ATGGCTGAGG AGAAGAAGAA TAAGAAGAAA AAGAGTGACG CTAAGGTTGA | 50 |
TTCTGAAGAA ACCGGTGAAG AATTCATTTC CGAGCACAGT TCTATGAAGG | 100 |
ATAAGGAAAA GAAGAGGAAG AAGAATAAGC GAGAGAATAA GGATGGTTTT | 150 |
ACTGGAGAAG ATATGGAGAT AACTGGGCGT GAAAGTGAGA AACTAGGTGA | 200 |
TGAGGTTTTT ATAGTTAAGA AGAAGAAGAA GTCGAAGAAG CCAATAAGGA | 250 |
TTGATTCTGA AGCTGTTGAT GCTGTGAAGA AGAAATCGAA AAAGAGAAGT | 300 |
AAGGAGACAA AGGCTGATTC CGAAGCTGAG GATGATGGTG TGGAGAAGAA | 350 |
ATCCAAGGAG AAAAGTAAGG AGACAAAGGT TGATTCTGAA GCTCATGATG | 400 |
GTGTGAAGAG GAAGAAGAAG AAGAGCAAGA AAGAATCTGG TGGTGATGTG | 450 |
ATAGAAAATA CTGAAAGCTC CAAAGTATCT GATAAGAAAA AGGGAAAAAG | 500 |
AAAGCGGGAT GATACTGATT TGGGAGCTGA AGAAAACATA GACAAGGAGG | 550 |
TGAAGAGGAA GAACAACAAG AAGAAACCAA GTGTGGATTC AGATGTTGAA | 600 |
GATATCAATT TGGACTCTAC AAATGATGGA AAGAAGAAAA GGAAGAAAAA | 650 |
GAAACAAAGT GAGGATTCAG AGACTGAAGA AAACGGCTTG AACTCTACCA | 700 |
AAGACGCAAA GAAGAGAAGG AAGAAGAAGA AGAAGAAGAA GCAAAGTGAA | 750 |
GTCTCTGAGG CTGAAGAAAA GTCTGATAAA AGTGATGAAG ACTTGACCAC | 800 |
CCCATCTACA TCAAGTAAAA GGGTGAAGTT TTCTGACCAA GTGGAGTTTT | 850 |
TTCCTAGTGA TGATGATGAA GGAACGGAAG ATGATGATGA AGAAGAAGTT | 900 |
AAGGTGGTGA GGGGTAAGCG GTTTACAAAA GAAGAAGATG AGATGGTAAA | 950 |
GAATGCTGTA TTAGAATACA TTGATAACCA TGCTTTAGGA GATGAGGGGA | 1000 |
TAAAGATGGT TATGGAATGC AAGGCATACC CACAACTTAA AGGCTGTTGG | 1050 |
AAAGAAATTA CATCTGCTTT ACCTTGGAGG ACTTATAATA GTGTGTATCA | 1100 |
TCGTGCACAT ACTATATTTG AAGCAGGATC TCAGGGGATA TGGACGAAAG | 1150 |
AGGATATTGA ACTCGTTATG GAGTTTCAAA AGACACACGG GAATGATTGG | 1200 |
AAAACACTTG CAGATGCAAT GGGTAAGCAC AGGAAGCATG TGAAAGACGC | 1250 |
TTGGAGGAGA GGAAGATTGG CAGGTAAGAA GAAAGGACAT TGGATGAGGG | 1300 |
AGGAGTATCA AAACCTCTTT GACCTTGTCA ACAAAGACCT TAGAATGAAA | 1350 |
GCATTCAAAG AGAAACACTC AAAACATGGT ATGCTCAAAG ATAACATCCC | 1400 |
TTGGATGGCT ATAAGCGACG TACTTGAAAC ACGGGACCAC GTGACTTGCT | 1450 |
GCCAGAAATG GTATGAGCAG TTGATATCAC CAATGGTAGC AAAGGGAATG | 1500 |
TGGGCTAACG TTGATGACTA TAGGCTCTTG GAAGAGCTTT TGAAACTGGA | 1550 |
TGCTGCTTGT ATCGACGATG TGGATTGGGA TAATCTTTTG GAGAATCGAG | 1600 |
ATGGAGAAGC TTGTAGAAAA CGGTGGAACC AGATGATCAT TCATATCGGC | 1650 |
GTACCGAAAT CGAAAACATT TGCAGAACAA GTTGAGATTT TGTCTGACAG | 1700 |
GTATTGCCCT GACATAGCTG AGGACAGAGA GGATTTTGAC AACAGACCCT | 1750 |
ATGATCCTGA AGATTAA | 1800 |
>AT5G41020.1 longest ORF length:588
MAEEKKNKKK KSDAKVDSEE TGEEFISEHS SMKDKEKKRK KNKRENKDGF | 50 |
TGEDMEITGR ESEKLGDEVF IVKKKKKSKK PIRIDSEAVD AVKKKSKKRS | 100 |
KETKADSEAE DDGVEKKSKE KSKETKVDSE AHDGVKRKKK KSKKESGGDV | 150 |
IENTESSKVS DKKKGKRKRD DTDLGAEENI DKEVKRKNNK KKPSVDSDVE | 200 |
DINLDSTNDG KKKRKKKKQS EDSETEENGL NSTKDAKKRR KKKKKKKQSE | 250 |
VSEAEEKSDK SDEDLTTPST SSKRVKFSDQ VEFFPSDDDE GTEDDDEEEV | 300 |
KVVRGKRFTK EEDEMVKNAV LEYIDNHALG DEGIKMVMEC KAYPQLKGCW | 350 |
KEITSALPWR TYNSVYHRAH TIFEAGSQGI WTKEDIELVM EFQKTHGNDW | 400 |
KTLADAMGKH RKHVKDAWRR GRLAGKKKGH WMREEYQNLF DLVNKDLRMK | 450 |
AFKEKHSKHG MLKDNIPWMA ISDVLETRDH VTCCQKWYEQ LISPMVAKGM | 500 |
WANVDDYRLL EELLKLDAAC IDDVDWDNLL ENRDGEACRK RWNQMIIHIG | 550 |
VPKSKTFAEQ VEILSDRYCP DIAEDREDFD NRPYDPED | 600 |