fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G41920 GRAS family transcription factor (.1)

>AT5G41920.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 24
EcoRI G|AATTC 70
HindIII A|AGCTT 173, 846
XhoI C|TCGAG 763


Click here to view TAIR data

>AT5G41920.1 length:1218
ATGACTACAA AACGCATAGA CAGAGATCTC CCATCTTCCG ACGATCCTTC 
50
CTCCGCTAAA CGCCGTATCG AATTCCCCGA AGAAACACTC GAAAACGACG 
100
GTGCTGCCGC AATCAAACTC CTTAGCTTAC TCCTCCAATG CGCCGAATAC 
150
GTAGCTACTG ATCATCTCCG TGAAGCTTCA ACACTTTTAT CCGAAATCTC 
200
CGAGATATGT TCTCCGTTCG GTTCCTCGCC GGAGCGAGTC GTCGCTTACT 
250
TCGCTCAAGC GCTACAAACG CGCGTGATCA GCTCTTACCT CTCCGGCGCG 
300
TGTTCTCCCC TCTCCGAGAA ACCACTCACT GTTGTTCAGT CTCAGAAAAT 
350
CTTCTCCGCC TTGCAGACTT ATAACTCCGT TAGTCCTCTG ATCAAATTCT 
400
CACATTTCAC GGCGAATCAA GCCATTTTTC AGGCGCTTGA CGGAGAAGAT 
450
TCCGTTCATA TCATCGATCT CGATGTTATG CAAGGTCTTC AATGGCCGGC 
500
TCTATTTCAC ATCCTCGCTT CACGTCCTCG AAAACTCCGA TCAATTCGAA 
550
TCACCGGATT TGGTTCCTCC TCCGATCTAC TCGCTTCAAC TGGCCGGAGA 
600
CTCGCCGATT TCGCATCATC GTTAAACCTC CCTTTCGAAT TTCATCCAAT 
650
TGAAGGCATA ATCGGAAACC TAATCGATCC GAGCCAACTC GCAACGAGAC 
700
AAGGAGAAGC TGTGGTGGTT CATTGGATGC AGCACCGGTT ATATGATGTT 
750
ACAGGGAACA ATCTCGAGAC GTTGGAGATT CTACGGAGGC TGAAACCGAA 
800
TCTGATCACG GTGGTGGAGC AAGAATTGAG CTACGACGAT GGAGGAAGCT 
850
TTTTAGGAAG ATTCGTGGAG GCTTTGCATT ATTATAGCGC GTTGTTTGAC 
900
GCGCTAGGAG ATGGATTGGG TGAAGAGAGT GGTGAGAGAT TCACGGTGGA 
950
GCAGATTGTT TTGGGGACGG AGATAAGAAA CATTGTGGCG CACGGAGGAG 
1000
GAAGAAGGAA GAGAATGAAG TGGAAAGAAG AACTGAGCCG GGTCGGGTTT 
1050
AGACCTGTTT CGCTTCGGGG TAACCCGGCG ACACAAGCGG GTTTATTGTT 
1100
GGGTATGTTA CCGTGGAATG GATATACTTT GGTTGAAGAG AATGGAACCC 
1150
TCCGTCTTGG CTGGAAGGAT CTCTCGCTTT TGACTGCCTC TGCCTGGAAA 
1200
TCTCAGCCGT TCGATTGA
1250

>AT5G41920.1 longest ORF length:405
MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY 
50
VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA 
100
CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED 
150
SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR 
200
LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV 
250
TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD 
300
ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF 
350
RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK 
400
SQPFD
450