fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G42630 KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2)

>AT5G42630.2 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 51
SacI GAGCT|C 117, 412


Click here to view TAIR data

>AT5G42630.2 length:672
ATGATGATGT TAGAGTCAAG AAACAGTATG AGAGCTTCAA ACTCAGTCCC 
50
AGATCTGTCT CTTCAGATCA GTCTTCCTAA CTATCACGCC GGAAAACCTC 
100
TTCACGGCGG TGACCGGAGC TCCACAAGCA GTGATTCTGG AAGCAGCCTC 
150
AGTGACCTGA GCCATGAGAA CAACTTCTTC AACAAACCTC TCTTGAGCTT 
200
AGGATTTGAC CATCATCATC AAAGGCGCTC AAACATGTTC CAACCTCAAA 
250
TCTACGGTCG AGATTTCAAG AGAAGCTCAT CATCAATGGT TGGTCTTAAA 
300
CGAAGCATTC GTGCTCCAAG AATGAGATGG ACTTCTACTC TTCATGCTCA 
350
CTTCGTCCAT GCTGTTCAAC TTCTTGGCGG CCATGAAAGA GCAACGCCTA 
400
AATCAGTGTT GGAGCTCATG AATGTGAAGG ATCTAACCCT AGCTCATGTC 
450
AAGAGTCACT TGCAGATGTA TAGAACAGTG AAATGCACTG ATAAAGGATC 
500
ACCAGGAGAA GGAAAGGTAG AGAAAGAGGC AGAGCAGAGG ATAGAGGACA 
550
ATAATAATAA TGAAGAAGCT GATGAAGGAA CTGACACAAA TTCGCCAAAC 
600
TCATCATCTG TGCAAAAGAC CCAAAGGTTA CTTTTTATTT ATATATTTAT 
650
TTTTGTAAAA TTTTGCATTT AA
700

>AT5G42630.2 longest ORF length:223
MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL 
50
SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK 
100
RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV 
150
KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN 
200
SSSVQKTQRL LFIYIFIFVK FCI
250