fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G42640 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G42640.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiHKAI, BsmAI, BsmBI, BsmFI, Bsp1286I, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BssHII, BssSI, BstAPI, BstEII, BstXI, Bsu36I, BtrI, BtsI, Cfr10I, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NgoMIV, NheI, NotI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PflMI, PleI, PmlI, PpuMI, PshAI, PspOMI, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, TliI, Tth111I, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 747, 4338, 4700, 4707, 5357, 5549, 5735, 6017
AccII(FnuDII) CG|CG 1270, 4906
AciI C|CGC 3827, 4505, 5652, 5972, 6068
AclI AA|CGTT 5835
AflIII A|CPuPyGT 259, 869, 2202, 4729
AluI AG|CT 138, 324, 2727, 2966, 3551, 3707, 3989, 4519, 5532, 5645, 5965
AlwNI CAGNNN|CTG 3429
ApoI Pu|AATTPy 27, 86, 162, 252, 351, 562, 799, 943, 1586, 1605, 1882, 1895, 2181, 2222, 2495, 2761, 2962, 3111, 3185, 3314, 3320, 3380, 3504, 3672, 3905, 3913, 4176, 4453, 4601, 4768, 4923, 5157, 5285, 5938
AseI AT|TAAT 45, 52, 2712, 2836, 2942, 3156, 3523, 3820, 6007
AvaI C|PyCGPuG 6386
AvaII G|G[AT]CC 4719, 5326
AvrII C|CTAGG 637
BamHI G|GATCC 5413
BclI T|GATCA 359, 1218
BfaI C|TAG 636, 705, 1418, 1435, 1718, 2605, 2971, 3805, 5036, 5062, 5408, 6220
BsaAI PyAC|GTPu 870, 1746, 5433, 5478, 5799
BsaBI GATNN|NNATC 4673, 5687
BsaJI C|CNNGG 637, 4735, 5334
BsiEI CGPuPy|CG 5427
BsiWI C|GTACG 5435
BslI CCNNNNN|NNGG 904
BsmI GAATGCN| 5563
BsoBI C|PyCGPuG 6386
BspDI AT|CGAT 1185, 2934, 4666
BspHI T|CATGA 3909, 5774, 5899
BsrDI GCAATGNN| 1534, 4466
BsrGI T|GTACA 629, 3767
BsrI ACTGGN| 1891
BssKI |CCNGG 700, 4511, 4735
BstBI TT|CGAA 35, 433
BstF5I GGATGNN| 627, 1207, 2563, 2613, 3454
BstNI CC|[AT]GG 4511, 4735
BstUI CG|CG 1270, 4906
BstYI Pu|GATCPy 5413, 5488, 5636
BstZ17I GTA|TAC 4338, 4707, 5735
BtgI C|CPuPyGG 5334
Cac8I GCN|NGC 5629
ClaI AT|CGAT 1185, 2934, 4666
DdeI C|TNAG 652, 1231, 1312, 1600, 2679, 2687, 2859, 3985, 5557, 5592
DpnI GA-CH3|TC 57, 358, 414, 809, 1217, 1516, 1865, 2377, 2935, 4098, 4118, 4286, 4523, 4587, 4899, 4917, 4940, 5412, 5426, 5487, 5635
DpnII |GATC 57, 358, 414, 809, 1217, 1516, 1865, 2377, 2935, 4098, 4118, 4286, 4523, 4587, 4899, 4917, 4940, 5412, 5426, 5487, 5635
DraI TTT|AAA 24, 2255, 2453, 3024, 3073, 3108, 3114, 3174, 3317, 3508, 3548, 3588, 3640, 3675, 3712, 5008, 5276
EcoRI G|AATTC 351, 3905
EcoRV GAT|ATC 4853, 5073
Fnu4HI GC|NGC 1279, 1528, 4773, 5531, 6068
HaeIII GG|CC 633, 639, 1288
HincII GTPy|PuAC 1210, 3726, 3810, 4529, 6332
HindIII A|AGCTT 3552, 3708
HinfI G|ANTC 155, 383, 435, 696, 821, 1057, 1173, 1547, 1774, 1842, 2419, 2575, 3427, 4056, 4076, 4127, 4251, 4427, 4478, 4515, 4644, 5507, 5712, 5803, 5947, 6089, 6129, 6265
HpaI GTT|AAC 1210
HpaII C|CGG 699
Hpy188I TCN|GA 361, 565, 959, 1311, 1449, 1601, 3330, 3430, 4116, 4605, 5316, 5485
Hpy99I CG[AT]CG| 256, 2031, 4904
HpyCH4III ACN|GT 1251, 2401, 2639, 3062, 3250, 3466, 4371, 4703, 4717, 4744, 4870, 5180
HpyCH4IV A|CGT 257, 490, 869, 1745, 1751, 1810, 2056, 2200, 3858, 4399, 5432, 5436, 5477, 5798, 5834
HpyCH4V TG|CA 3, 391, 1964, 2503, 3934, 4774, 4834, 5015, 5082, 5186, 5563, 5570, 5826, 5980, 6325, 6350
MboI |GATC 57, 358, 414, 809, 1217, 1516, 1865, 2377, 2935, 4098, 4118, 4286, 4523, 4587, 4899, 4917, 4940, 5412, 5426, 5487, 5635
MfeI C|AATTG 335, 1521, 2546
MseI T|TAA 23, 44, 51, 88, 195, 205, 396, 477, 671, 825, 1167, 1209, 1369, 1492, 1551, 1569, 1800, 1884, 1949, 2080, 2094, 2124, 2254, 2388, 2441, 2452, 2565, 2674, 2711, 2835, 2916, 2941, 2949, 3023, 3065, 3072, 3085, 3095, 3107, 3113, 3126, 3141, 3145, 3155, 3173, 3181, 3212, 3222, 3266, 3272, 3282, 3316, 3393, 3476, 3500, 3507, 3517, 3522, 3547, 3557, 3570, 3587, 3609, 3639, 3664, 3674, 3711, 3791, 3819, 3875, 4206, 4455, 4491, 4875, 5007, 5120, 5153, 5159, 5215, 5224, 5237, 5275, 5418, 5469, 5515, 5787, 5864, 6006, 6123, 6172, 6190, 6287
MslI CAPyNN|NNPuTG 4072, 4568, 4728, 5700
MspA1I C[AC]G|C[GT]G 4520
MspI C|CGG 699
MwoI GCNNNNN|NNGC 610, 1241
N.BstNBI GAGTCNNNN|N 5512
NciI CC|[CG]GG 700
NcoI C|CATGG 5334
NdeI CA|TATG 1097, 2305, 4219, 4231, 4780
NlaIII CATG| 127, 273, 298, 438, 504, 1214, 1639, 1688, 1730, 1758, 2643, 3908, 4102, 4123, 4568, 4728, 5188, 5333, 5373, 5773, 5898, 6348
NlaIV GGN|NCC 1145, 5327, 5413
NruI TCG|CGA 4907
NsiI ATGCA|T 5016, 5187, 5564, 5571, 6351
NspI PuCATG|Py 128, 505, 4729, 5189, 6349
PacI TTAAT|TAA 3145
PciI A|CATGT 4729
PmeI GTTT|AAAC 3175
PsiI TTA|TAA 67, 518, 2086, 2430, 2998, 3081, 3189, 3359, 3389
PspGI |CC[AT]GG 4511, 4735
PstI CTGCA|G 4
PvuI CGAT|CG 5427
PvuII CAG|CTG 4520
RsaI GT|AC 628, 1482, 1851, 3766, 4689, 5349, 5434, 5588, 5754
Sau3AI |GATC 57, 358, 414, 809, 1217, 1516, 1865, 2377, 2935, 4098, 4118, 4286, 4523, 4587, 4899, 4917, 4940, 5412, 5426, 5487, 5635
Sau96I G|GNCC 640, 4719, 5326
ScaI AGT|ACT 1483, 5350, 5589
ScrFI CC|NGG 700, 4511, 4735
SfcI C|TPuPyAG 4, 2473
SmlI C|TPyPuAG 1487, 4304, 4649, 5346, 5929, 6239
SpeI A|CTAGT 3806
SspI AAT|ATT 201, 294, 713, 863, 1065, 2370, 2953, 3227, 3270, 3287, 3398, 3635, 4024, 4420, 6107
StuI AGG|CCT 634
StyI C|C[AT][AT]GG 637, 5334
SwaI ATTT|AAAT 2256, 3318
Taqƒ¿I T|CGA 34, 157, 254, 304, 432, 1184, 1296, 2933, 4068, 4087, 4096, 4585, 4665, 5254, 5504, 5709, 5934, 5944, 6091
TfiI G|A[AT]TC 155, 383, 435, 696, 821, 1057, 1173, 1547, 1774, 1842, 2419, 2575, 4056, 4076, 4127, 4251, 4427, 4478, 4515, 4644, 5712, 5803, 6089, 6129
TseI G|C[AT]GC 1279, 1528, 4773, 5531
Tsp45I |GT[CG]AC 2205
Tsp509I |AATT 26, 85, 99, 161, 251, 313, 334, 350, 371, 398, 498, 561, 669, 751, 798, 840, 942, 950, 1044, 1090, 1130, 1520, 1585, 1604, 1623, 1711, 1827, 1847, 1881, 1894, 2082, 2088, 2096, 2110, 2180, 2221, 2257, 2448, 2494, 2545, 2554, 2568, 2719, 2760, 2946, 2961, 2986, 3001, 3083, 3110, 3124, 3143, 3157, 3179, 3184, 3210, 3313, 3319, 3337, 3379, 3391, 3489, 3503, 3520, 3543, 3567, 3655, 3671, 3748, 3770, 3873, 3904, 3912, 3972, 4175, 4211, 4244, 4452, 4600, 4634, 4767, 4922, 5091, 5117, 5147, 5156, 5206, 5217, 5239, 5247, 5284, 5299, 5365, 5937, 6008, 6285
TspRI NNCA[CG]TGNN| 3467, 4372
XbaI T|CTAGA 706, 2606
XmnI GAANN|NNTTC 1253, 4061, 5942, 6108


Click here to view TAIR data

>AT5G42640 genomic sequence (4000-4902,) length:6402
ctcctgcagt catccttgta ttttttaaat tttattcgaa gtgtattaat 
50
gattaatgga tcacatttat aataaaaata ctaataaatt taataaaata 
100
aattacaaga atgtgaactt ttattcggca tgttgtcaaa gctggttgag 
150
atgttgaatc gaaatttaca ttatatacat agggaacaac tatatattaa 
200
aatattttaa gcctcataac ataacactaa tgttttcaaa agtatcaaca 
250
caaattcgac gtgttcacaa cacacatggc aaagaaaaag ccaaatattc 
300
atggttcgat gttgaattgg gtaagagcta ataccaattg gtgatttcct 
350
gaattcgctg atcagacaaa caaattgggt taggattcca aatgcactta 
400
attgtttcgt ttcaggatca cgaaacatat ccttcgaatc atgtttttca 
450
tctcatcgct tttctctaaa aacatatatt aaaacgacaa aacgtaatga 
500
attggcatgt ttattggtta taatctgtgt ttatagtttt tttttttgtt 
550
tttgaaaaag aaaattctga aggtatggtt ttttgggagg ggactatata 
600
aaatgctctt ctcgccgacc taaatggatg tacaggccta ggcccacaac 
650
ttcttagtta ttccaaaaaa aattaaaagg tatttgaagt gtctttgaat 
700
ccgggtctag acaatattca acccacttgt ttagacgata ccaaatgtct 
750
acaatttttc tttttcatcc tatttcactt tctattccta atagttcaaa 
800
atttagattt gatctcctta cgaatcttaa ataagtatta caattctcat 
850
atatagaatg agaatattac acgtagagac actattttga aactttagcc 
900
acaaataggc actttgaaag gagaaggcac tttaccaaat caaaattcct 
950
aaattgccct ctgaactaca acgctttctc ctcattttct ctctcaactc 
1000
ttttctccat cgtctttatt tctctctctt tccaaaatca aaaccaattt 
1050
tttacgggaa tctcaatatt ccaaatcaaa actaaaaacc caatttcata 
1100
tgatttatca tcatcttccc tgtctctcaa caattatttg atttggttcc 
1150
atttatttct ctccttgatt aaggaatctc tgtcatcgat tacaatgaaa 
1200
agtgaggatg ttaaccatga tcagttacct tctaagcaat ctgggcttga 
1250
aacggttcgt gatgttgaga acgcgagtag cagcaaaaag gccattgtcg 
1300
atgtaacttc atctgaggca tagttgtcca ttgatgagtg tccaagcatt 
1350
caagtccaaa tggtcatcta ttaactcaca tttgaagcat agttgtccat 
1400
tgataagtgt ccaagcactc tagtccaagt ggtcatctag taactcacat 
1450
ctgaagcata gttgtccatt gatgagtgtc caagtactca agtttaagta 
1500
tataaagcgt gtaagaagat caattgtagc agcaatgttc tgttgttgat 
1550
tcttaatata ttcttcgttt ttaagttatg atagagaatt ttgagataat 
1600
ctcagaattt ctatgatttg taagaattat agagaaccac catgattgat 
1650
gattttgaaa aagaaaataa aaatgatgaa aaaaaaaaac atggaagaca 
1700
gagaagataa aaaattatgc tagtttgtct ccatgataac ttgtccacgt 
1750
aaacgtaacc atgtggaaat aagtgattct cataagcaaa agaatatgct 
1800
tttaaggtta gacgttcaat gaaacatcaa tttatcaaga aagaatcaaa 
1850
ttgtaccaaa caaggcgatc aaatggatat gaaatttaat actggaattt 
1900
gccaacttgg gttttccata aactctcaaa tgtttgattt tgataaactc 
1950
ttaaatgttt gattttgcaa ggaaagaaaa aaaagtaata atgagaagag 
2000
agagaaagag agagagagag aaaagaagaa gcgacgaaga agaaggaaaa 
2050
aaaaggaacg tggagagatg aaactttttt tttaattata attttttaat 
2100
tttcaggggt aaattggtca aaagtttaat gaaaaagttg gaaaagtgct 
2150
tcatccctga caagtgcctc aaaaggaata aaattctcta aaagtgtcta 
2200
aacgtgtcac attcccatat agaatttatc ggtagttatt ttcatattta 
2250
tttatttaaa ttagttttat atgtggtaaa atgtttagtt atatgagatg 
2300
atgacatatg tggtaaaata gacactatat gttagagaca aaagcgagaa 
2350
cgatgagtaa gttttaccaa atatttgaga tcaaacctgt taaaacaact 
2400
taccgtagtt tttatgatgg aatctatttt tataaacaca tattaaacta 
2450
attttaaatc gtctattttt cactatagag attttgattg tatgaaattt 
2500
ttgatgcaga gactttattt gtaaagattt tagagacttt agcatcaatt 
2550
ggtaaaattg tggatgttaa attgtgattc taaataatag aaatatacct 
2600
ataaatctag aggatgaaat aacaacaaaa cacgcacaaa ctgtcatgtt 
2650
agagcaactc caataaggtt ttgttttaac taagtttctt agttttagag 
2700
aaagaaaata tattaataaa aattatgtag ctttcttgaa tagtgaagaa 
2750
actctcttca aaatttctta tataaggtat tttgacctac tttggagaag 
2800
atttcttcaa tatataagaa actcacacat tttttattaa tatattttct 
2850
ctctctaaac taagaaactt atgttaggaa ctatcaatgg ggttgctctt 
2900
atatgttata gtcatattta atcaagttca gttatcgatc tattaataat 
2950
ttaatattca aaaatttagc ttctaggttt ccatcacaat ttcactctta 
3000
taaattatga gttatttgtg gtatttaaaa caatgagaaa tgtatctcca 
3050
tctaaacata taacagttaa ggtttaaatg ttataattaa acgatgttaa 
3100
atgtcggttt aaatttaaaa aaaagaatta agattatatt ttttaattaa 
3150
acgagattaa ttatcggttt aggtttaaac aattaaattt ataaacaggt 
3200
ttagatttta caattaaacg aagttaaata ttattttgga tttggaaata 
3250
acggttagag ttagatttta atattaaaca aggttaaata ttggtttggg 
3300
tttacaaaaa aaaaaattta aattttgtaa tcggacgaaa ttatatatcg 
3350
gtttgtattt ataaaagagt ggttagagtg aatttatttt ataattaaat 
3400
atttacttat ttatttatta gatgacagac tctgattggc gggaataaaa 
3450
agggatgaag ccaagcactg ttcattatta aatgagataa aattgatttg 
3500
gttaaatttt aaaaatgctt aaattaatca acaaaaaaaa caacaatttt 
3550
aaagcttctt aaaaatataa tttaagaaaa atagaagttt aaagagagca 
3600
aaaaagtcag ttaaagatgt aaagaaagaa cactaatatt ttaaaaactt 
3650
tgacctaatt atccgttaaa aaaatttaaa ctcaaaactt tgtgttcaaa 
3700
atcaaacaag ctttaaaaga ttgaagtcaa cattacaaat acatcttcta 
3750
attttttagg aaagaatgta caattcaaaa catactatat acttaaatat 
3800
aactaactag tcaacaaaga ttaataaccc gccaaaaaag ttattcaaag 
3850
taatcaataa cgtgccagat ttgaaattaa ctaaataaca aatatattga 
3900
ctttgaattc atgaatttca atatattacc ttttttgcac ttcaaaaata 
3950
tataaaagga tacataggga aataatttag atacacttag agctacaaaA 
4000
TGTCTTCCAT CCCAAATAGG TTCAATATTT ATGGTGGTGA TACCACAAAC 
4050
CATCGTGAAT CGCTTCCCAT CGAAATGAAT CACAACTCTC GAATGGTTCG 
4100
ATCCATGTTC ATTACATCTG ATCGCATGAA TCATAGAGAT TTGTTTTCTT 
4150
CTCCTCCTTC TTTCTCTTCT TATCAAAATT CACATATCTC TTCATCTTCT 
4200
GTTGGGTTTA ATAATTCACA TATGACTTAT CATATGCTGA AAAGAAATTA 
4250
TGATTCTGTT TCCCGTGCTG ATTATTTCTC TACTAAAGAT CATTCTCATT 
4300
TTACTCAAGT ATCTTTCACT CAAACCATCA CAAATAAGTA TACTACTATT 
4350
GTTCCTTCCA ATATATTTGA CACTGTTCAC TATGATATTG GTCGTGTCAA 
4400
ACGTGCCATA GATTTTAGAA ATATTTGGAA TCCTAAATCT CATCTTCCAA 
4450
AAAAATTTAA TAGGCAATGC GAGATTTTGA ATCCTACCCC TCTTAATATC 
4500
GTCTTTCCGC ACCAGGATTC AGCTGATCGT CAACATTTAG ACATTATTTT 
4550
CTCGTCATCA AAGCACAACC ATGTTTTCCA AGATGGTCGA TCCTTGAAGA 
4600
AAATTTCCGA ACCAACCAAT CTGTTTGAAA AATCTAATTC TTATGATTCT 
4650
CAAGAAGATG AGAAAATCGA TGCTTATCAA TATGATGGTC GTACACATAG 
4700
TCTACCGTAT ACGAAATACG GTCCATATAC ATGTCCCAGG TGTAACGGTG 
4750
TGTTTGATAC TTCTCAAAAA TTTGCTGCAC ATATGTTATC TCACTACAAT 
4800
AATGAGACGG ACAAAGAAAG AGACCAAAGA TTTCGTGCAA GAAATAAAAA 
4850
ACGATATCGT AAGTTTATGG ACAGTCTTAA AATATCAAAA CAGAAGATAT 
4900
GAtccgtcgc gatgggacga tcaaattttt caacatcttg tgatcgtaaa 
4950
ataagacctt gtttatgatt ttattttttc taatatctct tttccaactt 
5000
attttatttt aaaaaatgca taaatgtctt tctatttcta gtatttcatc 
5050
atatttgtta ttactaggaa tggatatcat atttgcatag aaaattgtaa 
5100
tctttatttg ctcttcataa tttaaggttt ggttgttttt tctaaagtaa 
5150
tttcttaaat ttaatacata atatggattt acagttatgc atgtaaagac 
5200
ataatataat tttcatttaa tttacttaaa gtgttcattt aattgtaaaa 
5250
ttatttcgat atatggtaaa atagttttaa atgaaaattt cccaatatct 
5300
aatttgtttt gtaaggtcag atttttggac ccaccatgga actttctcaa 
5350
gtacttgtct accaataatt cacacatgaa acatctcatt cttgaaatga 
5400
tgaaaccgac taggatccct taaaaacgat cgcacgtacg tcctaataca 
5450
tctcttcctt ctgttcatct ttaacatcac gtaaatcaga tccataagca 
5500
gagtttcgag tccagattaa aaatgcctaa agcagctttc taacctctgt 
5550
ctactacctt agaatgcatt atgcatccta caagtaaaag tacttagtaa 
5600
agccaaccaa accagtttat tctgtttcgc aagcaagatc ccgacaagct 
5650
cttccgcttc ttttccccca gcatctatcc aagatatata tcttccatac 
5700
aagtgtaaca tcgaatcttt ctgttcaaga ctatgtatac cctaacaata 
5750
gagcagtaca cacagcaact tgttcatgaa ccttctcgtt aaacacctta 
5800
cgtgaatcct ctgttcttta tgaaggttgc ataaaacgtt atgagcgaag 
5850
tagggacata cttcattaaa taaataaaac cctaacttga tgatgaagtc 
5900
atgaactttg tgtaaataag tgaatgttct tgaggtcgaa ttttttcgac 
5950
tcttgaacaa atcaagagct tctccgctac ttgcattctg gtctaaccca 
6000
cataacatta attattgtct acctttacca aactgaaaaa ataaggaagc 
6050
atcgtattcc agttccacgc cgcataatag caacagagag aatcgaagaa 
6100
gatgaaaata ttctgttatt caacttaatg attctgttac accgatactc 
6150
tttatatgat agagtatctc ggtttaatgt ttggtttaca cttaaccgaa 
6200
atcaaagatt acaaaccaac tctagtctat tatcctccct caAGATGAGC 
6250
CGTATATAGA AAGAAGACTC ATCTTGCCAA TAAGAGAATT AAACAGAGTA 
6300
GGAAACAAGG GCTTCGTCAA GACATCTGCA AGTTGACTTG TAGTATCCAC 
6350
ATGCATAGTC TTCAACATTC CTTGCTCAAT CCTGTCCCGA GTAATGTGGC 
6400
AA
6450