fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G42700 AP2/B3-like transcriptional factor family protein (.1)

>AT5G42700.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 145
NdeI CA|TATG 533


Click here to view TAIR data

>AT5G42700.1 length:636
ATGGTGGTCG AAAAACAAAC AAAGTACGAA GAATTTCGTT TGAAAAGAGT 
50
GGAAGAGAAC AAGAAACGAA TGGAAGCTCT GAATCTTCCA AAACTCTCTC 
100
AAATTCTCAA TTCCACTTCC GTCAAGATTT CTCCGATGAA GAAGAGATCT 
150
ATTCCTCGAA CACCAGAGAA GAAGATGGTT GATGTTAAAC GAGTGCACAT 
200
ACAGAGAAGG GGAGTGGGCA AGAAGAGAGA TTTATTGAAT CGAGTTTATG 
250
TTTCTGAAGA AATCAGAGAT GAGGCCATTT CAAGAGCTAA CAAATTTCAG 
300
GATGAATTGG GGAGTGGTTA TCCAAGTTTT GTGAAATCTA TGCTTCAATC 
350
ACATGTTTCT GGTGGCTTCT GGCTGGGTCT TCCAGTGCAA TTTTGCAAAT 
400
CTCACCTCGG GTTACATGAT GGTGTCATAA CTTTGATAGA TGAAGAAGGC 
450
GAGGAGTATG AGACTATCTA CTTAGCGAGA AAGAATGGAC TTAGTGGTGG 
500
ATGGATGGGA TTTGCGGTTG CTCACAATCT AGCATATGGG GATACTCTTG 
550
TTTTCGAGTT AGTTCGTCGT ACCGCTTTCA AGGTTTACAT TACAAGAGTT 
600
GGAAGTTGTG GAGAAAGCTC CAAAGATATG AGCTGA
650

>AT5G42700.1 longest ORF length:211
MVVEKQTKYE EFRLKRVEEN KKRMEALNLP KLSQILNSTS VKISPMKKRS 
50
IPRTPEKKMV DVKRVHIQRR GVGKKRDLLN RVYVSEEIRD EAISRANKFQ 
100
DELGSGYPSF VKSMLQSHVS GGFWLGLPVQ FCKSHLGLHD GVITLIDEEG 
150
EEYETIYLAR KNGLSGGWMG FAVAHNLAYG DTLVFELVRR TAFKVYITRV 
200
GSCGESSKDM S
250