Locus |
Common name |
Short description |
AT5G42820 |
ATU2AF35B |
Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) |
>AT5G42820.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
186 |
NdeI
| CA|TATG |
319 |
PvuII
| CAG|CTG |
365, 480 |
Click here to view TAIR data
>AT5G42820.1 length:852
ATGGCAGAGC ATTTAGCTTC AATCTTTGGT ACTGAAAAGG ATAGAGTGAA | 50 |
TTGTCCGTTT TACTTTAAGA TTGGTGCTTG TCGTCACGGT GACCGGTGCT | 100 |
CACGGCTTCA TAACCGTCCC ACCATCTCGC CGACGCTTCT CCTCTCGAAC | 150 |
ATGTACCAGA GACCTGACAT GATAACTCCA GGTGTGGATC CTCAGGGACA | 200 |
GCCGTTAGAC CCGAGTAAGA TCCAAGACCA CTTTGAGGAT TTCTACGAAG | 250 |
ATATTTTCGA AGAACTCAAC AAGTTTGGTG AAGTGGAGAG TCTCAATGTT | 300 |
TGTGACAATC TTGCTGATCA TATGATTGGG AATGTGTATG TTCTGTTTAA | 350 |
GGAGGAGGAT CACGCAGCTG CTGCGTTGCA GGCTTTGCAG GGGAGATTTT | 400 |
ATTCCGGTCG TCCTATCATT GCTGATTTCT CTCCTGTGAC GGATTTTAGG | 450 |
GAAGCTACTT GTAGGCAGTA TGAAGAAAAC AGCTGTAACC GTGGTGGGTA | 500 |
CTGTAATTTC ATGCATGTGA AGCAGATTTC GAGGGAGCTT AGGAGGAAAT | 550 |
TGTTTGGGAG GTATCGTCGT TCATACCGTC GGGGAAGCAG AAGTCGAAGC | 600 |
AGGAGTATAA GCCCTCGACG TAAGAGAGAG CATTCGCGAG AGCGAGAGAG | 650 |
AGGGGACGTT AGGGACCGTG ACCGGCATGG AAATGGGAAA AGGAGCAGTG | 700 |
ATAGATCAGA GAGGCATGAT CGGGATGGTG GTGGAAGGAG GAGACATGGA | 750 |
AGCCCGAAAC GGAGCAGAAG CCCACGAAAT GTGAGAGAAG GAAGCGAGGA | 800 |
AAGGAGGGCG AGAATTGAGC AATGGAACCG AGAACGTGAT GAGGGAGTTT | 850 |
AA | 900 |
>AT5G42820.1 longest ORF length:283
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN | 50 |
MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV | 100 |
CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR | 150 |
EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS | 200 |
RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG | 250 |
SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV | 300 |
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