fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G42820 ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)

>AT5G42820.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 186
NdeI CA|TATG 319
PvuII CAG|CTG 365, 480


Click here to view TAIR data

>AT5G42820.2 length:852
ATGGCAGAGC ATTTAGCTTC AATCTTTGGT ACTGAAAAGG ATAGAGTGAA 
50
TTGTCCGTTT TACTTTAAGA TTGGTGCTTG TCGTCACGGT GACCGGTGCT 
100
CACGGCTTCA TAACCGTCCC ACCATCTCGC CGACGCTTCT CCTCTCGAAC 
150
ATGTACCAGA GACCTGACAT GATAACTCCA GGTGTGGATC CTCAGGGACA 
200
GCCGTTAGAC CCGAGTAAGA TCCAAGACCA CTTTGAGGAT TTCTACGAAG 
250
ATATTTTCGA AGAACTCAAC AAGTTTGGTG AAGTGGAGAG TCTCAATGTT 
300
TGTGACAATC TTGCTGATCA TATGATTGGG AATGTGTATG TTCTGTTTAA 
350
GGAGGAGGAT CACGCAGCTG CTGCGTTGCA GGCTTTGCAG GGGAGATTTT 
400
ATTCCGGTCG TCCTATCATT GCTGATTTCT CTCCTGTGAC GGATTTTAGG 
450
GAAGCTACTT GTAGGCAGTA TGAAGAAAAC AGCTGTAACC GTGGTGGGTA 
500
CTGTAATTTC ATGCATGTGA AGCAGATTTC GAGGGAGCTT AGGAGGAAAT 
550
TGTTTGGGAG GTATCGTCGT TCATACCGTC GGGGAAGCAG AAGTCGAAGC 
600
AGGAGTATAA GCCCTCGACG TAAGAGAGAG CATTCGCGAG AGCGAGAGAG 
650
AGGGGACGTT AGGGACCGTG ACCGGCATGG AAATGGGAAA AGGAGCAGTG 
700
ATAGATCAGA GAGGCATGAT CGGGATGGTG GTGGAAGGAG GAGACATGGA 
750
AGCCCGAAAC GGAGCAGAAG CCCACGAAAT GTGAGAGAAG GAAGCGAGGA 
800
AAGGAGGGCG AGAATTGAGC AATGGAACCG AGAACGTGAT GAGGGAGTTT 
850
AA
900

>AT5G42820.2 longest ORF length:283
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN 
50
MYQRPDMITP GVDPQGQPLD PSKIQDHFED FYEDIFEELN KFGEVESLNV 
100
CDNLADHMIG NVYVLFKEED HAAAALQALQ GRFYSGRPII ADFSPVTDFR 
150
EATCRQYEEN SCNRGGYCNF MHVKQISREL RRKLFGRYRR SYRRGSRSRS 
200
RSISPRRKRE HSRERERGDV RDRDRHGNGK RSSDRSERHD RDGGGRRRHG 
250
SPKRSRSPRN VREGSEERRA RIEQWNRERD EGV
300