|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G42910 | Basic-leucine zipper (bZIP) transcription factor family protein (.1) |
>AT5G42910.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| HindIII | A|AGCTT | 678, 886 |
| NcoI | C|CATGG | 476 |
| SpeI | A|CTAGT | 445, 823 |
| StyI | C|C[AT][AT]GG | 476, 508, 638 |
Click here to view TAIR data
>AT5G42910.1 length:1113
ATGGATAGTT ACTGGAGACT TAAAAACTTG GTGAATGATT TGCCAGTTAG | 50 |
TACTTCTTTA AGCCGACAAG GATCAATATA CTCATGGACA GTAGATCAGT | 100 |
TTCAGACCAG CTTAGGGTTA GATTGTGGAT CAATGAACAT GGATGAGTTG | 150 |
GTTAAGCATA TATCAAGTGC TGAAGAAACA CAAGAGGGGT CGCAGAGGCA | 200 |
AGGCTCAACT ACTCTGCCTC CAACACTTAG CAAACAAAAT GTTGGTGAAG | 250 |
TTTGGAAATC TATCACAGAG GAAAAACACA CCAATAACAA TGGAGGAGTA | 300 |
ACAAACATTA CTCATCTTCA GGGACAACAA ACCTTAGGGG AAATCACTCT | 350 |
TGAAGAGTTT TTCATCCGTG CTGGAGCAAG AGGAGGTAAT ACCAATGGTG | 400 |
GCTCCATTCA TGACTCATCG TCATCGATTT CCGGTAATCC ACACACTAGT | 450 |
TTGGGTGTTC AGATTCAGCC AAAAGCCATG GTTTCTGATT TTATGAACAA | 500 |
TATGGTTCCA AGGAGTCATG ATTCTTATTT GCATCAAAAT GTGAATGGAT | 550 |
CTATGTCAAC ATATCAACCA CAACAATCTA TCATGTCTAT GCCAAATGGT | 600 |
TATTCTTATG GAAAACAAAT CCGATTCTCA AATGGTTCCT TGGGATCTGG | 650 |
TAACCAAAGT CTCCAAGATA CGAAGAGAAG CTTGGTCCCA AGTGTTGCGA | 700 |
CAATTCCAAG TGAAGCCATA ACATGTTCAC CGGTTACCCC ATTTCCAACA | 750 |
TTAAATGGGA AACAAAAGAT TAACGGTGAG TCTTCATTAC TCTCACCATC | 800 |
TCCATACATT AGTAATGGTA GTACTAGTAC AAGAGGTGGG AAGATTAATA | 850 |
GTGAAATTAC CGCGGAAAAA CAATTCGTTG ACAAAAAGCT TAGGAGAAAG | 900 |
ATTAAGAACC GAGAATCCGC AGCGAGATCA CGGGCTCGAA AGCAAGCTCA | 950 |
AACTATGGAG GTTGAAGTTG AACTTGAAAA CTTAAAGAAA GATTATGAAG | 1000 |
AGCTACTAAA ACAACATGTA GAGTTGCGGA AAAGACAAAT GGAACCAGGA | 1050 |
ATGATTAGCC TTCATGAACG ACCGGAGAGA AAGCTGAGGA GAACGAAATC | 1100 |
GGACATCAAG TGA | 1150 |
>AT5G42910.1 longest ORF length:370
MDSYWRLKNL VNDLPVSTSL SRQGSIYSWT VDQFQTSLGL DCGSMNMDEL | 50 |
VKHISSAEET QEGSQRQGST TLPPTLSKQN VGEVWKSITE EKHTNNNGGV | 100 |
TNITHLQGQQ TLGEITLEEF FIRAGARGGN TNGGSIHDSS SSISGNPHTS | 150 |
LGVQIQPKAM VSDFMNNMVP RSHDSYLHQN VNGSMSTYQP QQSIMSMPNG | 200 |
YSYGKQIRFS NGSLGSGNQS LQDTKRSLVP SVATIPSEAI TCSPVTPFPT | 250 |
LNGKQKINGE SSLLSPSPYI SNGSTSTRGG KINSEITAEK QFVDKKLRRK | 300 |
IKNRESAARS RARKQAQTME VEVELENLKK DYEELLKQHV ELRKRQMEPG | 350 |
MISLHERPER KLRRTKSDIK | 400 |