fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G43270 SPL2 squamosa promoter binding protein-like 2 (.1.2.3)

>AT5G43270.3 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 999
EcoRV GAT|ATC 48
HindIII A|AGCTT 144, 361
NdeI CA|TATG 743
PvuII CAG|CTG 68, 230
StyI C|C[AT][AT]GG 1063


Click here to view TAIR data

>AT5G43270.3 length:1260
ATGGAGTGTA ATGCAAAGCC ACCGTTTCAA TGGGAATTGG AAAACTTGAT 
50
ATCTTTTGGC ACTTCTACAG CTGAAGTTCC TAGAAAGCTA AAACCAATGG 
100
AGTGGGAAAT TGATGGATTT GATTGCACCT CTCTGTATTC TTCAAGCTTT 
150
GCCTATGCTG GTAGTTCAGG TTCTGATATA GCTCATGCTT TCTCTAAAAG 
200
CTCAAAGTCA ACTTCCATTA GCTCTTCATC AGCTGAAGTA AGAACACACA 
250
ATTTTACATC CGAAACTGGT GAAAGTCTTC CTGGAGAATT TGCAAAGGGG 
300
ATTGATACTT CTCCAAGTCT TGAACTTTCT TTTGGCTCTG GTGATCCGGT 
350
TCTCGGTTTA AAGCTTGGTA AACGAACGTA CTTTGAAGAC TTTTGGGAAG 
400
TGGAGAATGC TAAAGGTTTG GGACTTCCAG TGACTCTGGC TTCATCTTCT 
450
GTTTCTCCCG TGAAGAAATC GAAATCCATT CCTCAGAGGT TACAAACTCC 
500
TCACTGTCAA GTTGAAGGCT GTAATCTTGA TCTTTCATCA GCTAAAGACT 
550
ATCATCGGAA ACATAGGATT TGTGAAAATC ATTCAAAGTT TCCTAAAGTC 
600
GTTGTGAGTG GCGTAGAGCG TCGGTTCTGC CAACAATGTA GCAGGTTCCA 
650
CTGTCTCTCT GAGTTTGATG AGAAGAAACG TAGCTGTCGC CGACGTCTCT 
700
CAGATCACAA TGCAAGACGT CGCAAGCCAA ATCCTGGAAG GACATATGAT 
750
GGGAAACCAC AGGTGGATTT TGTATGGAAC AGATTTGCAC TTATCCATCC 
800
AAGAAGTGAG GAAAAGTTTA TATGGCCAAG TTCGAAGCAC GTACCATCAA 
850
GAGTGTTAAT GCCGCAACCT GCAAAGACTG AGATTTCCGA TACCGAGCAC 
900
AATAGATTTG GATTGTTGGA CCCCAAAACC AAAACCGCAA GAGCCGAGTT 
950
ATTCAGTAAA GAAAAGGTCA CAATCTCTTC ACACATGGGT GCTTCTCAAG 
1000
ATCTTGATGG TGCTCTCTCT CTTCTGTCAA ATTCAACAAC ATGGGTTTCT 
1050
TCCTCTGACC AACCAAGGCG TTTTACCCTT GATCACCATC CCTCAAGCAA 
1100
CCTCCAACCC GTAGCTCACC GGTCTGCGGC TCAACTCAAT TCAGTTTCCG 
1150
GCTATTGGCA GCCGGACCCA CCCGCAGTTG AAGGCCCGAC CGCTCTGCAT 
1200
AGAAATGGGG TAGGCCAGTT TAATGAAAAC TACTTCAGCT TGAACCAGTT 
1250
TTATAACTGA 
1300

>AT5G43270.3 longest ORF length:419
MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF 
50
AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG 
100
IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS 
150
VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV 
200
VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD 
250
GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH 
300
NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS 
350
SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH 
400
RNGVGQFNEN YFSLNQFYN
450