fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G43410 Integrase-type DNA-binding superfamily protein (.1)

>AT5G43410.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 257
SacI GAGCT|C 349
StyI C|C[AT][AT]GG 64, 257


Click here to view TAIR data

>AT5G43410.1 length:396
ATGGATCAAG GAGGTCGAGG TGTCGGTGCC GAGCATGGAA AGTACCGGGG 
50
AGTTCGGAGA CGACCTTGGG GAAAATATGC AGCAGAGATA CGAGATTCGA 
100
GGAAGCACGG TGAACGTGTG TGGCTTGGAA CGTTCGATAC GGCAGAGGAA 
150
GCGGCTAGAG CCTATGACCA AGCTGCTTAC TCCATGAGAG GCCAAGCAGC 
200
AATCCTTAAC TTCCCTCATG AGTATAACAT GGGGAGTGGT GTCTCTTCTT 
250
CCACCGCCAT GGCTGGATCT TCCTCCGCCT CCGCCTCCGC TTCTTCTTCT 
300
TCTAGGCAAG TTTTTGAATT TGAGTACTTG GATGATAGTG TTTTGGAGGA 
350
GCTCCTTGAG GAAGGAGAGA AACCTAACAA GGGCAAGAAG AAATGA
400

>AT5G43410.1 longest ORF length:131
MDQGGRGVGA EHGKYRGVRR RPWGKYAAEI RDSRKHGERV WLGTFDTAEE 
50
AARAYDQAAY SMRGQAAILN FPHEYNMGSG VSSSTAMAGS SSASASASSS 
100
SRQVFEFEYL DDSVLEELLE EGEKPNKGKK K
150