fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G43540 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G43540.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 143
NdeI CA|TATG 157
StyI C|C[AT][AT]GG 194, 261


Click here to view TAIR data

>AT5G43540.1 length:414
ATGGAGTGTG AGAGATCATC GTCGTCCACG TCATCAGAAA CCGGAGCAGT 
50
CAGGCACCGT CGTACGTCGT CGTCGTCAGT CTCCACCGTG ACGAGACGAA 
100
TGTACGAGTG CACTTTCTGC AAAAGAGGTT TCACAAACGC ACAAGCTTTA 
150
GGTGGTCATA TGAACATCCA TCGACGTGAC CGTCTCAACA AGGCCAAGGT 
200
GCAAAACGAT GCTGACGTGG CACTCTCGCA AACTCATAGA TGTTTCCACG 
250
TGGCGTCTGA CCTTGGAGGC TACGAGCAAG TAGACTCCGT CGTGTTGAGG 
300
ACGACGACCT CGAACTACAT CCAACACTTA CGAATCGGCT CGATGGCTAC 
350
AAGGAGAGAA AACGTCGTCG TTGAAGGAAA TGAAATCGAT TTGGAGCTGC 
400
GTCTTGGCTT ATGA
450

>AT5G43540.1 longest ORF length:137
MECERSSSST SSETGAVRHR RTSSSSVSTV TRRMYECTFC KRGFTNAQAL 
50
GGHMNIHRRD RLNKAKVQND ADVALSQTHR CFHVASDLGG YEQVDSVVLR 
100
TTTSNYIQHL RIGSMATRRE NVVVEGNEID LELRLGL
150