fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G43700 IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1)

>AT5G43700.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 208, 312
HpaI GTT|AAC 31
StyI C|C[AT][AT]GG 475


Click here to view TAIR data

>AT5G43700.1 length:561
ATGGAAAAAG TTGATGTTTA TGATGAGCTT GTTAACCTAA AGGCAACAGA 
50
GCTGAGATTG GGATTACCAG GGACAGAAGA AACTGTTTCT TGTGGAAAAA 
100
GCAACAAAAG AGTTTTACCT GAAGCTACTG AGAAAGAGAT TGAATCCACT 
150
GGAAAAACTG AAACCGCTTC TCCTCCAAAG GCTCAGATTG TTGGATGGCC 
200
ACCAGTTAGA TCTTACAGAA AGAACAATGT TCAGACAAAG AAGAGTGAAT 
250
CTGAAGGTCA AGGAAACTAT GTGAAAGTAA GTATGGATGG TGCTCCATAT 
300
CTAAGGAAGA TAGATCTAAC GATGTATAAA CAATATCCAG AGTTGATGAA 
350
ATCACTTGAA AACATGTTTA AATTCTCTGT GGGAGAATAT TTTGAGAGAG 
400
AAGGATATAA AGGCTCAGAC TTTGTACCTA CTTATGAAGA CAAAGATGGT 
450
GATTGGATGC TTGTTGGTGA TGTTCCTTGG GAGATGTTTG TTTCGTCTTG 
500
TAAGAGGCTA AGGATCATGA AAGGATCTGA AGTTAAAGGT TTAGGTTGTG 
550
GTGGTCTTTA A
600

>AT5G43700.1 longest ORF length:186
MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST 
50
GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY 
100
LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG 
150
DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL
200