fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G44210 AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)

>AT5G44210.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DdeI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HindIII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 279
AccII(FnuDII) CG|CG 130, 342, 354
AciI C|CGC 219
AflIII A|CPuPyGT 355
AgeI A|CCGGT 585
AluI AG|CT 199, 208, 442, 462, 577
ApaLI G|TGCAC 91
AvaI C|PyCGPuG 150, 164, 175, 470
BfaI C|TAG 225, 575
BsaJI C|CNNGG 118, 150, 164
BsaWI [AT]|CCGG[AT] 480, 495, 585
BsiHKAI G[AT]GC[AT]|C 91
BsiWI C|GTACG 325
BslI CCNNNNN|NNGG 149, 169, 270, 329
BsoBI C|PyCGPuG 150, 164, 175, 470
Bsp1286I G[GAT]GC[CAT]|C 91
BsrFI Pu|CCGGPy 585
BssKI |CCNGG 149, 163, 270, 383, 563
BstNI CC|[AT]GG 563
BstUI CG|CG 130, 342, 354
BstYI Pu|GATCPy 140, 567
BtgI C|CPuPyGG 118
Cfr10I [AG]|CCGG[TC] 585
DpnI GA-CH3|TC 139, 431, 491, 566
DpnII |GATC 139, 431, 491, 566
Fnu4HI GC|NGC 46, 132, 201, 222, 444
HhaI GCG|C 341
HinP1I G|CGC 341
HincII GTPy|PuAC 289, 319
HinfI G|ANTC 276, 309
HpaI GTT|AAC 289
HpaII C|CGG 149, 163, 270, 382, 479, 494, 584
Hpy188I TCN|GA 359
Hpy99I CG[AT]CG| 73, 293, 328, 337, 398
HpyCH4III ACN|GT 19, 285, 295, 322, 330, 531
HpyCH4IV A|CGT 315, 594
HpyCH4V TG|CA 90, 202, 373
MboI |GATC 139, 431, 491, 566
MluI A|CGCGT 355
MseI T|TAA 288, 452, 498, 570
MslI CAPyNN|NNPuTG 34
MspI C|CGG 149, 163, 270, 382, 479, 494, 584
MwoI GCNNNNN|NNGC 198
N.BstNBI GAGTCNNNN|N 281
NciI CC|[CG]GG 149, 163, 270, 383
NcoI C|CATGG 118
NlaIII CATG| 117, 375
NlaIV GGN|NCC 3, 241
NspI PuCATG|Py 376
PspGI |CC[AT]GG 563
RsaI GT|AC 324
Sau3AI |GATC 139, 431, 491, 566
ScrFI CC|NGG 149, 163, 270, 383, 563
SgrAI CPu|CCGGPyG 586
SmaI CCC|GGG 150, 164
StyI C|C[AT][AT]GG 118
Taqƒ¿I T|CGA 183, 429, 504, 523
TfiI G|A[AT]TC 309
TseI G|C[AT]GC 201, 444
Tsp45I |GT[CG]AC 145, 333, 379
Tsp509I |AATT 257
XmaI C|CCGGG 150, 164


Click here to view TAIR data

>AT5G44210.1 length:603
ATGGCTCCAA GACAGGCGAA CGGTAGAAGC ATTGCCGTGA GTGAAGGCGG 
50
CGGAGGGAAG ACGATGACGA TGACGACGAT GCGGAAGGAA GTGCACTTTA 
100
GAGGTGTGAG GAAGCGTCCA TGGGGTAGAT ACGCGGCGGA GATCCGTGAC 
150
CCGGGAAAGA AAACCCGGGT TTGGCTCGGG ACATTCGACA CGGCGGAGGA 
200
AGCTGCAAGA GCTTACGACA CCGCCGCTAG AGAGTTTCGT GGCTCCAAAG 
250
CAAAGACTAA TTTCCCTCTT CCCGGAGAGT CTACTACGGT TAACGACGGT 
300
GGCGAGAACG ATTCTTACGT CAACCGTACG ACGGTGACGA CGGCGCGTGA 
350
GATGACGCGT CAGAGATTTC CGTTTGCATG TCACCGGGAG CGTAAAGTCG 
400
TCGGTGGTTA TGCTTCTGCT GGTTTTTTCT TCGATCCGTC AAGAGCTGCT 
450
TCGTTAAGAG CAGAGCTTTC TCGGGTTTGT CCGGTTCGGT TTGATCCGGT 
500
TAATATCGAG TTGAGTATTG GTATTCGAGA AACCGTAAAA GTTGAACCGA 
550
GAAGAGAACT AAACCTGGAT CTTAACCTAG CTCCACCGGT GGTGGACGTT 
600
TAG
650

>AT5G44210.1 longest ORF length:200
MAPRQANGRS IAVSEGGGGK TMTMTTMRKE VHFRGVRKRP WGRYAAEIRD 
50
PGKKTRVWLG TFDTAEEAAR AYDTAAREFR GSKAKTNFPL PGESTTVNDG 
100
GENDSYVNRT TVTTAREMTR QRFPFACHRE RKVVGGYASA GFFFDPSRAA 
150
SLRAELSRVC PVRFDPVNIE LSIGIRETVK VEPRRELNLD LNLAPPVVDV 
200