fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G46010 Homeodomain-like superfamily protein (.1)

>AT5G46010.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrDI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, DraIII, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MlyI, MnlI, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PleI, PmeI, PpuMI, PshAI, PspOMI, PstI, PvuI, RsrII, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SpeI, SphI, StuI, Tth111I, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 4525
AccI GT|[AC][TG]AC 4513, 4528, 6018
AccII(FnuDII) CG|CG 486, 1551, 3874
AciI C|CGC 1136, 1550
AclI AA|CGTT 977, 5520
AflII C|TTAAG 3452, 5705
AflIII A|CPuPyGT 140, 487, 1835, 1857, 3222, 3508, 3875, 4222
AgeI A|CCGGT 4618
AhdI GACNNN|NNGTC 5006
AluI AG|CT 274, 360, 786, 946, 2008, 3241, 4007, 4411, 4877, 5148, 5344, 5528, 5760, 6037
AlwNI CAGNNN|CTG 4658
ApoI Pu|AATTPy 50, 422, 672, 938, 1454, 1632, 1823, 1994, 2025, 2368, 2417, 2487, 2556, 2795, 2986, 3125, 3260, 3366, 3716, 3829, 4020, 5242, 5974, 5987
AseI AT|TAAT 506, 719, 1405, 1474, 1494, 3187, 4284, 4819
AvaI C|PyCGPuG 5339
AvaII G|G[AT]CC 1901, 1944
BalI TGG|CCA 5794
BamHI G|GATCC 1134, 3495, 4377
BanI G|GPyPuCC 5851
BanII GPuGCPy|C 5345
BclI T|GATCA 1430, 4041, 4053, 5513
BfaI C|TAG 362, 1665, 2446, 2918, 2925, 3540, 4005, 4664, 5642, 5827, 5969, 6035
BglII A|GATCT 1185, 5276, 5424
BsaAI PyAC|GTPu 161, 472, 1109, 3509, 4205, 4308, 5063, 6045
BsaBI GATNN|NNATC 301, 336, 4043, 4661
BsaHI GPu|CGPyC 4525, 5430
BsaJI C|CNNGG 1130, 1941, 5797
BsaWI [AT]|CCGG[AT] 4618
BsiEI CGPuPy|CG 6003
BsiHKAI G[AT]GC[AT]|C 5345
BslI CCNNNNN|NNGG 1586, 2588, 2929, 5802
BsmI GAATGCN| 3299
BsoBI C|PyCGPuG 5339
Bsp1286I G[GAT]GC[CAT]|C 794, 1106, 1112, 5345
BspDI AT|CGAT 512, 2207, 5664
BspHI T|CATGA 4035, 5176
BspT107I(HgiCI) G|G[TC][AG]CC 5851
BsrBI GAG|CGG 5205
BsrFI Pu|CCGGPy 4618
BsrGI T|GTACA 2966, 3179
BsrI ACTGGN| 2672, 2897
BssKI |CCNGG 4134
BstF5I GGATGNN| 287, 2452, 5313
BstNI CC|[AT]GG 4134
BstUI CG|CG 486, 1551, 3874
BstYI Pu|GATCPy 1134, 1185, 1936, 3495, 4377, 4656, 5276, 5424, 5488, 5919
BtgI C|CPuPyGG 1130, 1941
BtrI CAC|GTC 1393
BtsI GCAGTGNN| 5741
Cac8I GCN|NGC 614, 5759
Cfr10I [AG]|CCGG[TC] 4618
ClaI AT|CGAT 512, 2207, 5664
DdeI C|TNAG 527, 789, 1615, 2082, 2097, 2887, 3027, 3293, 3950, 3956, 4183, 5356, 5474, 5531
DpnI GA-CH3|TC 336, 396, 769, 1133, 1184, 1429, 1935, 2204, 3494, 4031, 4040, 4052, 4376, 4483, 4655, 4661, 4990, 5275, 5423, 5487, 5512, 5905, 5918
DpnII |GATC 336, 396, 769, 1133, 1184, 1429, 1935, 2204, 3494, 4031, 4040, 4052, 4376, 4483, 4655, 4661, 4990, 5275, 5423, 5487, 5512, 5905, 5918
DraI TTT|AAA 832, 935, 1710, 1865, 2270, 2484, 3826
DrdI GACNNNN|NNGTC 4525
EaeI Py|GGCCPu 5794
EcoRI G|AATTC 2795, 3366, 4020
EcoRV GAT|ATC 301, 2505, 2788, 2935, 4338, 5306
Fnu4HI GC|NGC 3197, 6039
HaeIII GG|CC 4058, 5793
HhaI GCG|C 3199
HinP1I G|CGC 3199
HincII GTPy|PuAC 1979, 4450, 4513
HindIII A|AGCTT 275
HinfI G|ANTC 521, 2411, 2462, 2823, 2945, 5172, 5472, 5592, 5731, 5752
HpaI GTT|AAC 1979, 4450
HpaII C|CGG 4617
Hpy188I TCN|GA 244, 1238, 2791, 4374, 4808, 5309, 5355, 5453, 5562
Hpy99I CG[AT]CG| 3626, 4514
HpyCH4III ACN|GT 476, 630, 1142, 1584, 1660, 1967, 2352, 2612, 2968, 3380, 3848, 4446, 4684, 4772, 5494, 6004
HpyCH4IV A|CGT 160, 428, 471, 976, 1108, 1392, 1608, 1949, 2252, 2510, 3012, 3220, 3234, 3360, 3508, 4204, 4307, 4524, 5062, 5519, 6044
HpyCH4V TG|CA 132, 265, 279, 381, 457, 500, 592, 611, 1345, 1830, 2028, 2346, 2442, 2910, 3066, 3195, 3467, 4092, 4651, 5405, 5478, 5597, 5736, 5778
MboI |GATC 336, 396, 769, 1133, 1184, 1429, 1935, 2204, 3494, 4031, 4040, 4052, 4376, 4483, 4655, 4661, 4990, 5275, 5423, 5487, 5512, 5905, 5918
MfeI C|AATTG 929, 4958
MluI A|CGCGT 487, 3875
MscI TGG|CCA 5794
MseI T|TAA 52, 178, 270, 505, 718, 831, 934, 1026, 1154, 1220, 1404, 1444, 1464, 1473, 1493, 1574, 1677, 1709, 1852, 1864, 1952, 1978, 2181, 2234, 2269, 2312, 2483, 2695, 2743, 2765, 2774, 2842, 3004, 3172, 3186, 3211, 3276, 3352, 3397, 3451, 3474, 3532, 3825, 3835, 3881, 4283, 4323, 4449, 4636, 4691, 4747, 4818, 4852, 4923, 5263, 5373, 5667, 5704, 5772, 5811, 6087
MslI CAPyNN|NNPuTG 376, 2450, 3375, 3997, 4049, 5578, 5914
MspA1I C[AC]G|C[GT]G 5761
MspI C|CGG 4617
MwoI GCNNNNN|NNGC 273, 1018, 1788, 3298, 5768
N.BstNBI GAGTCNNNN|N 5177, 5597
NdeI CA|TATG 2473, 4987, 5039
NlaIII CATG| 139, 281, 455, 1514, 1834, 1856, 2017, 2037, 2129, 2912, 4034, 4090, 4221, 5050, 5175, 5599, 5677, 5734, 5914
NlaIV GGN|NCC 1134, 3495, 4377, 5451, 5851
NsiI ATGCA|T 1346, 2911
NspI PuCATG|Py 140, 1835, 1857, 2913, 4222, 5600
PaeR7I C|TCGAG 5339
PciI A|CATGT 140, 1835, 1857, 4222
PflMI CCANNNN|NTGG 5802
PmlI CAC|GTG 1109, 5063
PsiI TTA|TAA 346, 1049, 1785, 1884, 2492, 4723, 4824, 5093
PspGI |CC[AT]GG 4134
PvuII CAG|CTG 5761
RsaI GT|AC 473, 998, 2883, 2965, 3178, 3604, 3866, 4202, 4443, 5541
SacI GAGCT|C 5345
SalI G|TCGAC 4513
Sau3AI |GATC 336, 396, 769, 1133, 1184, 1429, 1935, 2204, 3494, 4031, 4040, 4052, 4376, 4483, 4655, 4661, 4990, 5275, 5423, 5487, 5512, 5905, 5918
Sau96I G|GNCC 1901, 1944
ScrFI CC|NGG 4134
SfcI C|TPuPyAG 2812
SmlI C|TPyPuAG 3452, 5202, 5339, 5420, 5705, 5723, 5846
SnaBI TAC|GTA 161, 472, 4205, 4308, 6045
SspI AAT|ATT 2062, 2595, 2627, 2679, 3855, 4175, 4816
StyI C|C[AT][AT]GG 5797
SwaI ATTT|AAAT 1711, 1866, 3827
Taqƒ¿I T|CGA 511, 771, 1759, 2206, 2330, 2778, 3120, 3238, 3320, 4422, 4512, 5338, 5377, 5663, 5981
TfiI G|A[AT]TC 521, 2823, 5731, 5752
TliI C|TCGAG 5339
TseI G|C[AT]GC 3197, 6039
Tsp45I |GT[CG]AC 1611, 2460, 3377, 3421, 4928, 5130, 5741
Tsp509I |AATT 11, 34, 49, 268, 348, 421, 460, 503, 671, 680, 720, 781, 900, 928, 937, 1006, 1081, 1158, 1406, 1453, 1462, 1475, 1483, 1495, 1631, 1712, 1822, 1861, 1993, 2024, 2052, 2367, 2378, 2416, 2439, 2486, 2534, 2555, 2573, 2794, 2817, 2829, 2985, 3002, 3060, 3073, 3124, 3174, 3184, 3209, 3245, 3252, 3259, 3365, 3457, 3529, 3715, 3828, 3837, 3879, 3896, 4019, 4281, 4311, 4346, 4362, 4600, 4752, 4767, 4820, 4826, 4867, 4920, 4957, 4962, 5123, 5161, 5241, 5265, 5350, 5367, 5467, 5973, 5986
TspRI NNCA[CG]TGNN| 500, 1143, 1615, 2613, 2672, 4687, 5478, 5741
XbaI T|CTAGA 4665
XcmI CCANNNNN|NNNNTGG 3088
XhoI C|TCGAG 5339
XmnI GAANN|NNTTC 672, 2578, 2597


Click here to view TAIR data

>AT5G46010 genomic sequence (4000-4138,4370-4599,) length:6099
tatatcatag tcaattctaa cacatcctta cgactaatta tgatagggtg 
50
aatttaagta aatgacaaac gaaaaagtgt tattggcagt aaatgtaata 
100
gaagaagaga agaagacatt tatatatcat atatgcaaaa catgtgtata 
150
aatatatact tacgtatatt ttgatggtat taagaaatat acagaatgat 
200
ggatttttga atacatatat atatatatat atatatacat accttctgaa 
250
gatggagaag aaatgttgca attaaagctt tgcatggatg atggaagatg 
300
gatatcatcg tgttgccttg atgattatga tgattatgat ccttattata 
350
attcttgtta tagctagatg acattatgat gatgcaggag atagatagat 
400
caatatatta ccattttcat caaatttcta cgtccatcaa taaatcaata 
450
tattaccatg caattttcat ctacgtacag tttattacgc gtctctctca 
500
ctgcaattaa tatcgatggt agaatcacta aggaaaaaat aaaataaaaa 
550
aataatataa agcaaggcat ataaaacaca cagacctatg atttgcatac 
600
attgtataaa tatgcacgca tcacgaatac acggtcataa aaatatatat 
650
gaaaaaaact tggagaagaa aaaattcaac taatttgaac ttcttttact 
700
cgtaagtagg taaaacgcat taatttatat atatatatat atatatacat 
750
atatgtttac tatcagggcg gatcgagaac ctaatttagc ttagggcaca 
800
ataagtttta catcattata ttattatttt ttttaaaaca tttcttactt 
850
tcttcactat tttgaaacat tttcactact atcacatttg tcattttgaa 
900
caattatgtt ttagcaaaat aaactgaaca attgtttaaa tttgtttagc 
950
tcaacgatac ctcatatctc ataaccaacg tttacacttg ttacacattg 
1000
tacttctaat tggctaataa ggcattttta atggtttttt attttgtatt 
1050
ataaatgtgg agtattttag tgtctataac ataattactt ggaaaaaaga 
1100
gcatagggca cgtgcccacc ttacttatgc cgtggatccg ccactgttta 
1150
ctatgttaaa attgttcttt cacaaaagtc tttgagatct gtattatctt 
1200
tctttttttg tttctttttg attaaaacca caactttttc cgattaggaa 
1250
actcccatat ttgtagtaaa tagtagttct ttatttttca tccattagag 
1300
taactaccaa ctcatttttt ttttgtcttt tactaaaaac actatatgca 
1350
ttatgatata tattctgtat tcataataaa aatacagata ttcacgtctt 
1400
atacattaat ttgaagacaa gcaaatgctt gatcatctgt tgcctttaag 
1450
ttgaaatttc ataaattaag tttattaatt cataaattag tttattaatt 
1500
accttacaaa aaacccatga cccatacaaa agaaatcatt tcaacatatt 
1550
tccgcgtttt atagattgta tttctttaag cctaacggtg gaaaccacaa 
1600
aatctctaaa cgtcactgag cagttctcgg taaatttttt tttttttttt 
1650
tttttggaaa acagttctag gtatttcttt aagcataaat gttactttat 
1700
ttctgtctat ttaaattata ttgttttgta aagttttagg ttatgaggaa 
1750
gttgctaaaa tcgaccctga agaaaccaag ttgcttataa tgctcataga 
1800
gttcatcaag taagtgaaga gcaaatttct atgcacatgt agtccataac 
1850
atattaacat gtaatttaaa tgtcataatc ttcttataat ataccttaca 
1900
aggaccatat attatatatg tatatatata tatatagatc ccacggacct 
1950
acgttaaaaa aagtcatact gttattctgt taactacttt tagaaatttc 
2000
ctttcttata gctgatgtca tggtaaattt gcattctcca tgaaacattt 
2050
tacaatttat caatattttt agttttgttc tactgagatt ttttattcta 
2100
agttatttta tcgtatatat attattgata catgaaataa tgtatatgaa 
2150
caaaaaaaaa gtattgactg attggatact tgttaatgtc tctcctctat 
2200
ttatagatcg attatatata gttcaagtag gtgcgttaag ttttgtgttt 
2250
actacgttga tgatattctt ttaaaaaagt cttcaagata tttccctcta 
2300
tgtgttcact tgattaaaag cacaactttt ttcgattggg aaactcttgc 
2350
acacagttct tactcctaaa tttgtatgta attatttttc acatccattg 
2400
tatcaaccac cgactcaaat ttacatacca ctttattcaa aattgcacta 
2450
ggatgtgaat gtgactcata tacatatgtg tcttttaaat tttataaaca 
2500
catagatatc cacgtttata catttgaaca tacacaattc gtaatctttt 
2550
agttgaaatt tcttttagaa aaagaattat ttccatacaa aggaaatatt 
2600
tcaacatatt tcactgtgtt atagataata tttattttag cctaatgaac 
2650
acaacacaat ctccacacat cactgggcaa tattccgtaa tatagtttaa 
2700
tagtttatca gttatatata caactaaaat atctattagt ttgcttaaaa 
2750
gaaaataata tatatattaa gaaacttaat cgaaaacgat atctgaattc 
2800
cttttttttt actatagtaa tttgaatcta aattatgtat aagttaagac 
2850
aatatgttta ttttcaacat tatgcgtgaa gatggtactt agacaaactg 
2900
gtgaagataa atgcatgttc tagcctctag gtgggatatc aagtggactc 
2950
ctataaatag aaggttgtac agtttatata tgtgaaaatt taggatatgg 
3000
acaaattaaa ataacgtgaa aactccactt aggatatatg ttttgagtta 
3050
tcttggaaca taattattgc aaacaattcc aagaagagtt tggcgaacca 
3100
tttagaaaat atgtttcata ctcgaaattt ttatgtaaaa atgttctata 
3150
tatagttttt ttattttttt tgcttaattg tacataatta atataatgca 
3200
gcgcatctct aattaaaacg aacgtgtcgt ttatcacgtt cgagctaatt 
3250
cgtaatttgg aatttggttt tatgggctta atgtttattt aggcttagaa 
3300
tgcttgtgtt tgtatgcttc ttcgagcaaa ggttttcgtt ctctttgact 
3350
tatttaagaa gacgtgaatt cattattgtg actgtttttg attattgatt 
3400
aaagatattc aaaaatatat tgtgacaggt tttgagaaga ggactttcaa 
3450
tcttaagcaa ttttcgtgtg caaagttaaa aagttatgag agaaggatcc 
3500
atcaatcaca cgtatcatta tgtattacac aatttaatcc actagaccat 
3550
attttttctt tttcttttct cttttttttt ttcccacccg aatatgtgta 
3600
ttgttgtacc tttagcaatc tcattgcgtc gtgtatattt tccttttttt 
3650
ctgttgaact caactaacta tatatgtata tcatctaatc aaagaatgtg 
3700
gacgagtaaa aagttgaatt tcatcttcgt caagtttctt tcataaatat 
3750
ctttatgtgt gtatgcgtaa tgcgtgtata tttatactat ctttgtgtgt 
3800
tttatatgcc ttgctttata tttcatttaa atttctttaa ttatttttac 
3850
cgtcaatatt agttgtagta cgaaacgcgt aattaaaggt agatgaaaat 
3900
tgctatatat tgatttgtaa aatggagata ctttgttatc tatctcttgc 
3950
cttagcctaa gcacttctat ctatctcctt cttctttatc atcatccaaA 
4000
TGTCATCTAG CTCAAACAAG AATTCTAATA AGGATCATGA TGATCATCAT 
4050
AATGATCAAG GCCAACACAA TACCATCCAT ACTCCGTCTT TCATGCACAC 
4100
CTTTGAAATA AGTAACATTT CTTCTCCATC TTCTCCAGgt atatatatgt 
4150
attcacaaat ccaacaacac tatgaatatt tttcttagtt acatcaaata 
4200
tgtgtacgta tatatttata tacatgtgtt tgatttgact atgacttcta 
4250
aatgtcttct tctcttcttt gttacattta ctaattaata acacattctt 
4300
tttttgctac gtaattacat tctcttaaat agtaaacgat atctaacaat 
4350
tcaccctttt atgaattagT CGTATCGGAT CCTAAACCAG AATGGAAACC 
4400
AAATCAACAT CAAGCTCAAA TACTCGAAGA ACTTTTCATC GGCGGTACGG 
4450
TTAACCCGTC TCTAACCAGT ATCAAACAAA TCACGATCAA ACTTCAAAGT 
4500
TATGGTGAAG AAGTCGACGA CGCAGACGTC TACAAGTGGT TTCACAACCG 
4550
AAAATATAGT CGCAAACCGA AGTTAGTATC ATATTTTATG TTCTTGTAAa 
4600
taattgtggg tattattacc ggtatctatt atttacttta atgttttggt 
4650
tttgcagatc ctgatctaga aatgttgaag atatacagtg ggttaaaacc 
4700
aaaatatata aagaggagtt tgttataaac gctttatatt tctatttatt 
4750
aagaattatg atagagaaaa ttactgtgat aagttgtcat acttctataa 
4800
atgtattttc tgaaaaatat taattataat tattcaaaat atagcatcca 
4850
tacttaaact aatcatctaa tttttttgag cttttatcaa tatataggtt 
4900
tcatatttcc cataaaaata taatttaagt cactattcat attatgtaga 
4950
acaaatacaa ttgaattata caaacataca aatagtcata tgatctcttg 
5000
gactatttgt ctatgtttga ccaaaaaaaa ctttatttca tatgtcaaaa 
5050
tcatgtagaa accacgtgga cgcttctcgt tactttttct ttttataaag 
5100
ttgttgaaaa cgcaacttcc acgaaattga gtgacaagaa cacgaacaga 
5150
gcttacaata aaaattgaaa atgagTCATG AGTGCGTAAC AAGTTTGTAG 
5200
TCTTGAGCGG TTTTCTCCAT TTCTATTTTG TTCACACGGC TAAATTCATC 
5250
TTCTGCCTCA CTTCTTAATT TTATGAGATC TTGAAGAAGA AGAAGAAATG 
5300
ATGTTGATAT CGGATGTGGC TTCATtagtt ggaggtgtct cgaggagctc 
5350
caatttctga gattttcaaa ttggttaatc gaagaagcca agaaagtgaa 
5400
aaggattgca aacccttatc tcaagatctg gcgtccacaa tggagagatt 
5450
ggttccgatt ttcaaagaaa ttgactcagt gcaagaaaga tccaacggtg 
5500
aactaaatgt tgtgatcaaa acgttagaaa gctgagaaga tggtacacaa 
5550
atgttcaaga gttccgaaga gaccatcata atgaatgtaa gagagtcttg 
5600
catgttgttc tatttatatt tagcataaca ctttgacata aacctagacg 
5650
aataagaata tctatcgatt aacgctctca tgcctactct tgtatccaga 
5700
gatacttaag cgtctaacaa ctcttgagga ggattcatgc agtgacacag 
5750
acgaatctgc cagctggttt tgcttaatat gcaaatatct tggtggccaa 
5800
ggcttggaaa gtttaaccag tcatctctct agtcaaaaac attcacttga 
5850
ggcaccaaca tctgtataag gcaaatgaga tttatatttg tagaagaaac 
5900
atcaaggatc acaagcatgg atctttgctt tctacaacaa caaatgaaaa 
5950
atcattatga ttgttgtttc ctagaattta catcgaaaat ttgaaaaact 
6000
tacgaccgtg atggattgta gacaaacaag acctaactag ctgctacgta 
6050
taggattttt attttgggat tgccaatgtt ttcaagtctt aaaacaaca
6100