fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G46830 ATNIG1, bHLH028 NACL-inducible gene 1 (.1)

>AT5G46830.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 454, 659, 679
EcoRI G|AATTC 705
NheI G|CTAGC 481
SacI GAGCT|C 845
XhoI C|TCGAG 88


Click here to view TAIR data

>AT5G46830.1 length:1536
ATGATTAATA CCGACGATAA CTTATTGATG ATCGAAGCTC TCTTGACCTC 
50
CGATCCGTCG CCACCATTAC TTCCGGCGAA TCTCAGCCTC GAGACTACTC 
100
TCCCGAAGCG TTTACATGCT GTGTTGAATG GAACCCACGA GCCCTGGAGT 
150
TACGCCATTT TCTGGAAACC GTCGTACGAT GACTTTTCCG GTGAAGCAGT 
200
TCTCAAATGG GGCGACGGAG TTTACACTGG TGGCAACGAG GAAAAGACAC 
250
GAGGGAGGTT GAGGAGGAAG AAGACGATTC TGTCGTCTCC GGAGGAGAAA 
300
GAGCGTCGGA GTAATGTTAT TCGGGAGCTT AACTTGATGA TCTCCGGCGA 
350
AGCGTTTCCG GTGGTTGAAG ACGACGTCAG TGATGACGAT GACGTGGAAG 
400
TGACGGATAT GGAGTGGTTC TTCTTGGTTT CCATGACGTG GAGTTTTGGT 
450
AACGGATCCG GGTTAGCGGG TAAGGCGTTT GCTAGCTATA ACCCGGTTTT 
500
GGTTACCGGT TCGGATCTGA TTTACGGGTC GGGTTGTGAT CGGGCTAAAC 
550
AAGGAGGGGA TGTAGGGTTA CAGACCATCT TGTGTATTCC TTCACATAAC 
600
GGAGTGTTGG AGCTTGCATC CACGGAGGAG ATCCGACCAA ATTCGGATCT 
650
TTTTAATAGG ATCCGGTTTC TTTTTGGAGG ATCCAAATAT TTTTCTGGAG 
700
CCCCGAATTC GAACTCGGAG CTTTTCCCAT TTCAGTTAGA GAGCAGTTGT 
750
TCAAGTACTG TAACCGGTAA CCCGAATCCT AGTCCGGTTT ATCTACAGAA 
800
CCGGTATAAT TTGAACTTCT CGACGTCATC TTCCACATTG GCGAGAGCTC 
850
CATGCGGCGA TGTACTGAGT TTTGGCGAGA ATGTTAAACA GAGTTTTGAA 
900
AATCGGAACC CTAATACTTA TTCTGATCAG ATTCAAAACG TCGTCCCTCA 
950
CGCGACGGTG ATGCTGGAGA AGAAGAAGGG AAAAAAGCGC GGGAGAAAAC 
1000
CGGCGCATGG TAGAGACAAG CCTTTGAACC ACGTGGAAGC AGAGAGGATG 
1050
AGACGTGAGA AGCTAAACCA CAGATTCTAC GCATTACGAG CGGTTGTACC 
1100
AAACGTATCG AAAATGGACA AAACGTCGTT GCTCGAAGAC GCGGTTTGTT 
1150
ACATAAACGA GCTGAAATCA AAAGCTGAAA ACGTTGAATT GGAGAAACAT 
1200
GCGATTGAGA TTCAGTTCAA TGAACTCAAG GAGATTGCAG GACAACGAAA 
1250
CGCAATTCCT AGCGTTTGTA AATACGAGGA AAAGGCATCA GAGATGATGA 
1300
AGATCGAAGT GAAGATTATG GAAAGTGATG ATGCAATGGT TAGAGTTGAA 
1350
TCAAGGAAGG ATCATCATCC AGGAGCGAGA TTGATGAATG CTTTGATGGA 
1400
TTTGGAGTTA GAAGTGAATC ATGCGAGCAT TTCTGTGATG AACGATCTTA 
1450
TGATACAACA AGCGAACGTG AAGATGGGGT TGAGAATCTA CAAGCAGGAA 
1500
GAGCTTAGGG ATTTGTTGAT GTCGAAAATT AGCTGA
1550

>AT5G46830.1 longest ORF length:511
MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS 
50
YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK 
100
ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG 
150
NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN 
200
GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC 
250
SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE 
300
NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM 
350
RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH 
400
AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE 
450
SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE 
500
ELRDLLMSKI S
550