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| Locus | Common name | Short description |
| AT5G46880 | HDG5, HB-7 | HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) |
>AT5G46880.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BsrDI, BssHII, BssSI, BstEII, BstUI, BstXI, Bsu36I, BtrI, BtsI, DraIII, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SfaNI, SfiI, SfoI, SmaI, SnaBI, SphI, StuI, SwaI, Tth111I, XbaI, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 817, 1543, 2128, 2140 |
| AciI | C|CGC | 53, 1788, 2264, 2430 |
| AclI | AA|CGTT | 338 |
| AflII | C|TTAAG | 448, 553 |
| AflIII | A|CPuPyGT | 929, 1554, 1622, 2438 |
| AluI | AG|CT | 297, 582, 681, 801, 880, 1147, 1291, 1342, 1415, 1603, 2079, 2096, 2117, 2456 |
| ApaLI | G|TGCAC | 1558 |
| ApoI | Pu|AATTPy | 967, 1061 |
| AvaI | C|PyCGPuG | 708, 2236 |
| AvaII | G|G[AT]CC | 1786 |
| BanI | G|GPyPuCC | 590 |
| BbvCI | CC|TCAGC | 2398 |
| BclI | T|GATCA | 758, 1935 |
| BfaI | C|TAG | 803, 1190, 1248, 1293, 1335, 1650, 1662, 1955, 2458 |
| BsaBI | GATNN|NNATC | 1940 |
| BsaHI | GPu|CGPyC | 1198 |
| BsaJI | C|CNNGG | 627, 1102, 2205, 2237 |
| BsaWI | [AT]|CCGG[AT] | 1381, 2113 |
| BsiEI | CGPuPy|CG | 1409 |
| BsiHKAI | G[AT]GC[AT]|C | 1558 |
| BslI | CCNNNNN|NNGG | 273, 374, 497, 609, 1387, 2238 |
| BsmI | GAATGCN| | 1162 |
| BsoBI | C|PyCGPuG | 708, 2236 |
| Bsp1286I | G[GAT]GC[CAT]|C | 1558 |
| BspDI | AT|CGAT | 1411 |
| BspHI | T|CATGA | 303, 1175, 1455, 1986 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 590 |
| BsrFI | Pu|CCGGPy | 2415 |
| BsrGI | T|GTACA | 847 |
| BsrI | ACTGGN| | 718 |
| BssKI | |CCNGG | 81, 1848, 2019 |
| BstAPI | GCANNNN|NTGC | 737 |
| BstBI | TT|CGAA | 2042 |
| BstF5I | GGATGNN| | 162, 943 |
| BstNI | CC|[AT]GG | 1848, 2019 |
| BstYI | Pu|GATCPy | 264, 365, 650 |
| BstZ17I | GTA|TAC | 817 |
| BtgI | C|CPuPyGG | 1102 |
| Cac8I | GCN|NGC | 2056, 2160 |
| Cfr10I | [AG]|CCGG[TC] | 2415 |
| ClaI | AT|CGAT | 1411 |
| DdeI | C|TNAG | 328, 748, 1140, 1573, 1798, 1807, 2397 |
| DpnI | GA-CH3|TC | 263, 364, 649, 686, 757, 896, 1408, 1645, 1676, 1822, 1922, 1934, 2383 |
| DpnII | |GATC | 263, 364, 649, 686, 757, 896, 1408, 1645, 1676, 1822, 1922, 1934, 2383 |
| DraI | TTT|AAA | 388 |
| DrdI | GACNNNN|NNGTC | 1794 |
| EaeI | Py|GGCCPu | 720, 1105 |
| EcoRI | G|AATTC | 967 |
| Fnu4HI | GC|NGC | 53, 59, 610, 697, 1054, 1433, 1480, 2098 |
| HaeIII | GG|CC | 614, 719, 1104 |
| HhaI | GCG|C | 2367 |
| HinP1I | G|CGC | 2367 |
| HincII | GTPy|PuAC | 3, 1195, 2140, 2146 |
| HindIII | A|AGCTT | 1148, 1343 |
| HinfI | G|ANTC | 282, 1115, 2044, 2148, 2178, 2209, 2228, 2291 |
| HpaII | C|CGG | 80, 323, 1380, 2112, 2414 |
| Hpy188I | TCN|GA | 285, 362, 558, 725, 770, 1041, 1224, 1265, 1797, 2192, 2206, 2381 |
| Hpy99I | CG[AT]CG| | 1619, 2138, 2269, 2285 |
| HpyCH4III | ACN|GT | 195, 587, 621, 664, 1260, 1609, 1778, 1815, 2136, 2170, 2283, 2340, 2373 |
| HpyCH4IV | A|CGT | 337, 1620, 2142, 2310, 2436 |
| HpyCH4V | TG|CA | 698, 729, 1162, 1431, 1481, 1557, 1626, 1696, 1768, 2027, 2099, 2422 |
| MboI | |GATC | 263, 364, 649, 686, 757, 896, 1408, 1645, 1676, 1822, 1922, 1934, 2383 |
| MseI | T|TAA | 387, 428, 447, 530, 552, 1029, 1071, 2120, 2376 |
| MslI | CAPyNN|NNPuTG | 308, 859 |
| MspA1I | C[AC]G|C[GT]G | 2432 |
| MspI | C|CGG | 80, 323, 1380, 2112, 2414 |
| MwoI | GCNNNNN|NNGC | 59, 737, 1155, 1602, 2001, 2264, 2430 |
| NciI | CC|[CG]GG | 81 |
| NcoI | C|CATGG | 1102 |
| NdeI | CA|TATG | 1772 |
| NlaIII | CATG| | 155, 302, 808, 853, 928, 1087, 1101, 1174, 1421, 1454, 1495, 1532, 1553, 1985, 2064 |
| NlaIV | GGN|NCC | 473, 590, 616, 1329 |
| NspI | PuCATG|Py | 929, 1496, 1533, 1554 |
| PaeR7I | C|TCGAG | 708 |
| PciI | A|CATGT | 929, 1554 |
| PflMI | CCANNNN|NTGG | 273, 374 |
| PspGI | |CC[AT]GG | 1848, 2019 |
| PstI | CTGCA|G | 1697 |
| PvuI | CGAT|CG | 1409 |
| RsaI | GT|AC | 486, 846, 1084, 1313 |
| SalI | G|TCGAC | 2140 |
| Sau3AI | |GATC | 263, 364, 649, 686, 757, 896, 1408, 1645, 1676, 1822, 1922, 1934, 2383 |
| Sau96I | G|GNCC | 615, 1786 |
| ScrFI | CC|NGG | 81, 1848, 2019 |
| SexAI | A|CC[AT]GGT | 1849 |
| SfcI | C|TPuPyAG | 1697 |
| SgrAI | CPu|CCGGPyG | 2416 |
| SmlI | C|TPyPuAG | 448, 553, 708 |
| SpeI | A|CTAGT | 1191 |
| SspI | AAT|ATT | 2188 |
| StyI | C|C[AT][AT]GG | 627, 1102 |
| Taqƒ¿I | T|CGA | 454, 707, 1410, 1617, 2041, 2139 |
| TfiI | G|A[AT]TC | 282, 1115, 2044, 2178, 2209, 2228, 2291 |
| TliI | C|TCGAG | 708 |
| TseI | G|C[AT]GC | 59, 697, 1433, 1480, 2098 |
| Tsp45I | |GT[CG]AC | 1006, 2343 |
| Tsp509I | |AATT | 101, 107, 563, 966, 1060, 1270, 1385, 1687, 1976, 2024, 2152, 2252 |
| TspRI | NNCA[CG]TGNN| | 718, 1768 |
| XhoI | C|TCGAG | 708 |
| XmnI | GAANN|NNTTC | 1473, 1747 |
Click here to view TAIR data
>AT5G46880.1 length:2463
ATGTTGACAA TGGGAGAAGG TAATGTGATG ACTTCAAACA ACAGATTTGC | 50 |
TTCGCCGCCG CAGCAGCCGT CTTCTTCTTC TCCGGGAACA ATCCAAAACC | 100 |
CTAATTTCAA TTTCATACCT TTCAACTCAT ATTCATCCAT TATCCCGAAG | 150 |
GAAGAGCATG GGATGATGAG TATGATGATG ATGATGGGAG ATGGAACAGT | 200 |
AGAGGAAATG ATGGAAAACG GGTCGGCGGG TGGGTCATTC GGGTCAGGTA | 250 |
GTGAACAAGC AGAAGATCCA AAGTTTGGAA ACGAATCTGA TGTCAATGAG | 300 |
CTTCATGACG ATGAACAACC TCCTCCGGCT AAGAAGAAAC GTTATCACAG | 350 |
ACACACTAAT CGTCAGATCC AAGAAATGGA AGCGTTGTTT AAAGAAAACC | 400 |
CTCATCCAGA CGACAAACAA AGAAAGAGAT TAAGTGCTGA ACTTGGTCTT | 450 |
AAGCCTCGAC AAGTCAAGTT TTGGTTCCAA AATAGGCGTA CCCAAATGAA | 500 |
GGCACAACAA GACAGAAATG AGAATGTGAT GTTAAGGGCA GAGAACGATA | 550 |
ATCTTAAGTC GGAGAATTGT CATCTTCAGG CGGAGCTACG GTGCCTCTCT | 600 |
TGTCCTTCTT GCGGCGGCCC CACCGTCCTT GGCGACATTC CTTTCAACGA | 650 |
GATCCACATT GAGAACTGTC GCCTCCGTGA AGAGCTTGAT CGTCTGTGCT | 700 |
GCATTGCCTC GAGATACACT GGCCGTCCGA TGCAATCTAT GCCACCATCT | 750 |
CAGCCATTGA TCAATCCTTC TCCGATGCTT CCACATCATC AACCTTCATT | 800 |
GGAGCTAGAC ATGAGTGTAT ACGCTGGGAA CTTTCCAGAA CAATCTTGTA | 850 |
CAGACATGAT GATGCTTCCT CCACAAGATA CAGCTTGTTT CTTCCCAGAT | 900 |
CAAACTGCCA ACAATAACAA CAACAACAAC ATGTTACTTG CGGATGAAGA | 950 |
AAAGGTTATC GCTATGGAAT TCGCTGTCTC TTGTGTTCAA GAACTTACTA | 1000 |
AAATGTGTGA CACAGAAGAG CCTTTGTGGA TTAAGAAGAA ATCAGACAAG | 1050 |
ATTGGCGGCG AAATTTTGTG TCTTAACGAG GAAGAGTACA TGAGGTTGTT | 1100 |
CCCATGGCCG ATGGAGAATC AAAACAACAA AGGAGATTTT CTTAGAGAAG | 1150 |
CTTCAAAGGC GAATGCAGTC GTTATCATGA ACAGCATAAC ACTAGTTGAC | 1200 |
GCCTTTCTAA ACGCTGATAA ATGGTCAGAG ATGTTCTGTT CAATCGTGGC | 1250 |
TAGGGCGAAA ACTGTTCAGA TAATTTCATC AGGAGTTTCT GGAGCTAGTG | 1300 |
GTTCTCTCCT TCTGGTACTA TCTCCTCTGG TTCCAACTAG AGAAGCTTAT | 1350 |
TTTCTTCGGT ATGTGGAACA AAACGCAGAA ACCGGAAATT GGGCAATCGT | 1400 |
GGATTTCCCG ATCGATAGCT TCCATGACCA AATGCAGCCA ATGAATACTA | 1450 |
TTACTCATGA GTATAAGAGA AAACCTTCAG GCTGCATCAT TCAGGACATG | 1500 |
CCTAATGGAT ACTCACAAGT CAAGTGGGTG GAGCATGTTG AAGTAGACGA | 1550 |
GAAACATGTG CACGAGACTT TTGCTGAGTA TGTGAAAAGC GGAATGGCTT | 1600 |
TTGGAGCTAA CCGTTGGCTC GACGTGTTGC AGAGACAATG CGAGAGGATC | 1650 |
GCTAGTCTAA TGGCTAGAAA CATAACTGAT CTTGGAGTAA TTTCATCTGC | 1700 |
AGAAGCAAGG AGGAACATAA TGAGGTTATC ACAGAGACTT GTGAAAACAT | 1750 |
TCTGTGTGAA TATAAGCACT GCATATGGAC AGTCTTGGAC CGCTTTGTCT | 1800 |
GAGACAACTA AGGACACCGT GAGGATCACG ACAAGGAAAA TGTGTGAACC | 1850 |
TGGTCAGCCA ACAGGAGTTG TTCTTTGTGC TGTCTCAACC ACTTGGCTTC | 1900 |
CATTTTCTCA CCATCAAGTC TTTGATCTTA TCCGTGATCA ACATCACCAA | 1950 |
TCTCTGCTAG AGGTTTTGTT CAATGGTAAT TCACCTCATG AAGTTGCTCA | 2000 |
TATCGCAAAT GGTTCACATC CTGGAAATTG CATCTCTCTT CTTCGAATCA | 2050 |
ATGTCGCAAG CAACTCATGG CATAATGTTG AGCTGATGCT TCAAGAAAGC | 2100 |
TGCATTGATA ACTCCGGTAG CTTAATCGTC TACTCCACCG TCGACGTTGA | 2150 |
CTCAATTCAG CAGGCGATGA ACGGTGAAGA TTCTTCCAAT ATTCCGATTT | 2200 |
TACCCCTCGG ATTCTCCATT GTCCCCGTGA ATCCTCCCGA GGGTATTTCC | 2250 |
GTCAATTCGC ATTCTCCGCC GTCGTGTCTT CTCACCGTCG GGATTCAGGT | 2300 |
CTTGGCGAGT AACGTCCCAA CAGCGAAACC AAATCTCTCC ACCGTCACCA | 2350 |
CCATCAATAA CCATCTCTGC GCCACCGTTA ATCAGATCAC TTCTGCCCTC | 2400 |
AGCAACACCA TTACGCCGGT GATTGCATCT TCCGCTGACG TGTCCAATCA | 2450 |
AGAAGTCAGC TAG | 2500 |
>AT5G46880.1 longest ORF length:820
MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK | 50 |
EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE | 100 |
LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL | 150 |
KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS | 200 |
CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS | 250 |
QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD | 300 |
QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK | 350 |
IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD | 400 |
AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLVL SPLVPTREAY | 450 |
FLRYVEQNAE TGNWAIVDFP IDSFHDQMQP MNTITHEYKR KPSGCIIQDM | 500 |
PNGYSQVKWV EHVEVDEKHV HETFAEYVKS GMAFGANRWL DVLQRQCERI | 550 |
ASLMARNITD LGVISSAEAR RNIMRLSQRL VKTFCVNIST AYGQSWTALS | 600 |
ETTKDTVRIT TRKMCEPGQP TGVVLCAVST TWLPFSHHQV FDLIRDQHHQ | 650 |
SLLEVLFNGN SPHEVAHIAN GSHPGNCISL LRINVASNSW HNVELMLQES | 700 |
CIDNSGSLIV YSTVDVDSIQ QAMNGEDSSN IPILPLGFSI VPVNPPEGIS | 750 |
VNSHSPPSCL LTVGIQVLAS NVPTAKPNLS TVTTINNHLC ATVNQITSAL | 800 |
SNTITPVIAS SADVSNQEVS | 850 |